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Report for CCDS85744.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
85744.1 Public Mus musculus X Shroom4 23 108 98 CCDS HistoryNCBI Gene:208431Re-query CCDS DB by CCDS ID:85744.1Re-query CCDS DB by GeneID:208431See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 85744.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000089520.2 ENSMUSP00000086949.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000089520.2Link to Ensembl Protein Viewer:ENSMUSP00000086949.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000089520Re-query CCDS DB by Protein ID:ENSMUSP00000086949
Original member Current member NCBI NM_001313765.1 NP_001300694.1 Accepted alive Link to Nucleotide Sequence:NM_001313765.1Link to Protein Sequence:NP_001300694.1Re-query CCDS DB by Nucleotide ID:NM_001313765Re-query CCDS DB by Protein ID:NP_001300694Link to BLAST:NP_001300694.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001300694.1 1359 Q1W617-2 1359 100% 0 0

Chromosomal Locations for CCDS 85744.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 6580908 6580963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 6583192 6585655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 6590956 6591017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 6623660 6624436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 6629101 6629281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 6632223 6632492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 6633448 6633717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4080 nt):
ATGCATTTCCCTTCTGAAGCCTTCAGCTTGTCCTGGCATTCCGGTTGCAACACTAGTGACGTGAGTGTAC
AGTGGTGCCCCCTCTCCCGGCATTGCAGCACTGAGAAGAGCAGCTCTATTGGCAGCATGGAAAGCCTGGA
ACAGCCAGGCCAACCTACCTACGAAGGCCACCTCTTACCCATTGACCAGAACATGTACCCCAGCCAGCGT
GACTCAGCCTATAGCTCCTTCTCAGCCAGCTCAAATGCCTCTGACTGTGCCCTTTCCCTTAAGCCAGAGG
AACCACCCTCTACAGACTGTGTCATGCCAGGCCCAGGGCCGATTAAAGTCACTGATGACCAAGCTAATGT
ATCTGAGAACTCAGGAAGTAGCCACAGTACCAGTGAGGACCATGTGACCTCCACTTCCCATGCATCATCC
TACTCAGACGAGGGCCACCACTCAGGACCTGCCAAGATGGCACGGGGTCCACCAGAGCCTCCAGTGAGGA
GCGACAGCCTTCCGGCCTCTAGAGCCCAACTTCTCAATGGAGAGCAGCATCGTGCATCTGAACCGGTGGA
CTCCTTACCACAAAAGGAAAAACCAGGCTTAGAGACAGTGCTGCCCCCAAGGAGCTCTAATCAGTTCTGC
TGTCTTAGTGGGCAAGACCAAGTGACAGATGAGGACCACCAGAACTGTGAGCTCAGCAAGCCTTCTGAAT
CCAGCCAGGATGACTGTGAGCATCTACTGATAGAGGACTCCTCCAAAGCTCTTGATTCCCCCAAAGCCCA
TGACAAAGGTTCCAACAAAGAGTTTGGCCTGCTTAAGGAGGCTTCAGCAGATTTGGCTAACACTTTGAAC
TTTGGTGCCATTCCGCACCTCCGAGGAACCATGGAACATCGCCATAGTGCTCCTGAACAGCTGTTGGCAT
CCCACTTGCAGCAGGTGCACCTTGATTCCAGAGGCAGCAAGGGGATGGAGTTGCCAATTGGGCAGGATGG
ACACCAGTGGACTGTGTCCCCTTTGCACAACAACCCTAAAGGGAAGAAAAGTCCAAGTCTTCCCACGGGA
GGCACCCAGGACCAGACCCGTAAAGAAAGGAAGACCACGCCCCTGGATGATAAACTGATGGCTTCTGTAC
ACCAGAGCCAAAGTGATGTCCTACTTGGGGAGGTTGATGGACACCCAAACCGAGCAGGCAGAGCAAGCAG
TGACTTGACTAGCCAGCAGCCCTCTGCCACTTGTTCCTCTGTTCAACAAACCAGAGACTTCCTTTCAGCC
CATAAAATAGTTGATCACACAGAAGCAAGTGAAGAAGGTGACAATGAGCCTAAGGAGTGTGGCCGATTGG
GTGGCAGAAGAAGTGGAGGCCCCCGGGGCCGCTCCATCCAAAACCGACGGAGGAGTGAGAGGTTTGCTAC
CAATCTACGGAATGAAATTCAGAGGAGGAAAGCCCAGCTCCAGAAAAGTAAGGGCCCGTTGTCACAATTG
TGTGACACGAACGAAGCCGTGGAAGAGACCCAAGAGCCTCCAGAAAGTCCTCCGCTCTCTGCTTCTAACG
CATCTCTTCTGCCTTCATATAAAAACGTCCCTAGTCCTGGAGACAAGGTCTTTAACAAAAGCATGATTCT
CAGGGCTAGATCTTCAGAATGCCTCAGCCAAGCCTCAGAGAGTTCCAAAGCTAGGGGAGGCGTAGAGGGA
AGAATGAGCCCTGGCCAGAGGTCTGGCCAGTCTTCTTTGGCCCTGAACACATGGTGGAAAGCATCTGACT
CATCCACCTTAGACACTGAGAAAGCAAATGCTCACCATGGGGTTTGTAGAGGCCATTGGAGATGGTCTCC
AGAACATAACGCACAGCCACAGGTGGCACTATCCACAGAAGCGCCTTCCAACCCAGATGACAGCAAAGAG
TTGAAGACATCTACTCCTCAAGCTGGGGAAGAAGCTGTCCTCATGCCGTTTGCAGACAGAAGAAAGTTCT
TTGAAGAGAGCAGCAAATCTTTATCTACATCACATTTGCCAGGCTTAACCACTCATAACAACAAGCCATT
TATCCAGAGACAAAAACCTATAGATCAAAACTTCCAGTCAGTGAGCTATAGGGATTTAAGATGCCATCCT
CTGGACCAATCATATCATTCTGCAGACCAATCATACCATGCTGCAGACCAATCCTATCATTCCTTGTCAC
CACTTCAGTCAGAAACTCCTACTTACCCAGAATGCTTTGCTACTAAAGGCCGAGACAATTCCCTGTGCTG
TAAGCCAGTGCATCACGGGGACTGTGATTACCACAGGACCTGTTCTCATCCCTGCAGTGCTCAGGGAACT
GTAAGGCATGATCCTTGCATCTGTTGTTCTGGAGAAATCTGCCCTGCCTTGCTAAAGAGAAACTTGTTGC
CAAAATGCCACAACTGTAGGTGTCACCACCACCAATGCATCCGGTGTACAGGTTGCTGTCACGGTCCTCA
GCATAGTGCCCATGAGGACAGCAGCATGGCACCTGGCAATGCTTGGAAATCCAGGAAGGCAGCCATACAG
GAATTTCCTGTGGACAAGTGGAAGCCAATAACAGGAAACAGGAAAACTAGTCATTCTGGGAGGGAAATGG
CTCATTCTAAGGCCGGCTTTTCATTGTCTACTCCCTTCCGACCTTGCATTGAGAATCCAGCACTGGACTT
GTCAAACTACCGAGCAGTCTCTTCTCTTGACATCCTTGGAGACTTCAAACGTGCCTCAAACAAGCCAGAG
GAATCTTCGGTTTATGAGGATGAGAACTCTGTTGCCTCCATGCCCCGCCCACTGCGGAGCCGAGCCTTCT
CTGAGAGTCACATCAGTTTAGAGCCTCAAAACACCCAGGCCTGGGGAAAACATCAGAGAGAATCATTTAG
TAAAGGCAGTGAGACTCAGCCAGATACACTTGGGGCCCGAAAGAAGGTCTTTCCTCCTCCTCGCCCTCCT
CCTCCCAACTGGGAAAAATATAGGCTCTTTCGTGCAGCACAGCTGCAGCAGCAGCAGCAGCAACAACAAC
AACAACAACAACAACAGCGATGTGAAGAGGAAGAAGAGAAGGAGCAAGAGGAGGAAGGAGAGAAAGAGGA
GGACCTACCACCCCAGTATTTTAGTTCAGAACTCACTGGCTCATGTGCCCCTAATACAGAGGAACAGCCA
CAGTCCCTGAAGATGGGCCACCAGGAAGCCTCAAGGCAGGGTTCACAGAGCCTCCAAGAGCAAGAGGCCT
TTGCTCTGCATCCTAGCAATTTTGTGCCTCCAGTAAGGGGCTGCACTGTACCCCAGCCTGAGAAAGCTCA
ACATCCTTGCTATTATGGCACTCATGGACTATGGAGGACAACTGAACAAGAAGCTACTGTGACCCCAAAA
CAAGAGTTTCAGCACTTCTCACCTCCTAAGGGGGCCTCAGGAATCCCTACCTCTTACTCAGCTTATTATA
ATATCTCTGTGGCCAAGGCAGAACTGCTGAACAAGTTAAAACAGCAGCCTGAGATGGCAGAGGCAGGCCT
GGGAGAGGAGGGAGTTGACTATGAACTGGCTCAAAAAAAGATTCAGCTCATTGAAAGCATTAGTCGAAAA
CTTTCTGTCCTGCGGGAGGCCCAGCGCGGGCTACTGGATGACATCAATGCCAATGCTGCCCTTGGAGAGG
AGGTAGAGGCCAACTTAAAAGCTGTCTGCAAATCCAATGAGTTTGAAAAGTACCATTTGTTTATTGGAGA
CCTGGACAAAGTGGTCAACCTGTTGTTGTCACTCTCTGGACGACTAGCCCGGGTGGAGAATGCTCTCAAC
AGCATTGATTCAGAGTCCAACCAGGAGAAGTTGGTGCTGATAGAGAAGAAGCAGCAGCTGACGAACCAGT
TGGCAGATGCCAAGGAGTTGAAGGAGCATGTGGATGGCAGGGAAAAGCTGGTGTTCGGCATGGTCTCCCG
CTACCTGCCTCAGGACCAGCTCCAAGATTACCAGCACTTTGTGAAGATGAAATCTGCTCTCATCATTGAA
CAGAGAGAGCTGGAGGAGAAGATCAAACTTGGAGAAGAGCAGCTTAAATGCCTCAAAGAGAGCCTGCACT
TGGGGCCCAGCAATTTCTAA

Translation (1359 aa):
MHFPSEAFSLSWHSGCNTSDVSVQWCPLSRHCSTEKSSSIGSMESLEQPGQPTYEGHLLPIDQNMYPSQR
DSAYSSFSASSNASDCALSLKPEEPPSTDCVMPGPGPIKVTDDQANVSENSGSSHSTSEDHVTSTSHASS
YSDEGHHSGPAKMARGPPEPPVRSDSLPASRAQLLNGEQHRASEPVDSLPQKEKPGLETVLPPRSSNQFC
CLSGQDQVTDEDHQNCELSKPSESSQDDCEHLLIEDSSKALDSPKAHDKGSNKEFGLLKEASADLANTLN
FGAIPHLRGTMEHRHSAPEQLLASHLQQVHLDSRGSKGMELPIGQDGHQWTVSPLHNNPKGKKSPSLPTG
GTQDQTRKERKTTPLDDKLMASVHQSQSDVLLGEVDGHPNRAGRASSDLTSQQPSATCSSVQQTRDFLSA
HKIVDHTEASEEGDNEPKECGRLGGRRSGGPRGRSIQNRRRSERFATNLRNEIQRRKAQLQKSKGPLSQL
CDTNEAVEETQEPPESPPLSASNASLLPSYKNVPSPGDKVFNKSMILRARSSECLSQASESSKARGGVEG
RMSPGQRSGQSSLALNTWWKASDSSTLDTEKANAHHGVCRGHWRWSPEHNAQPQVALSTEAPSNPDDSKE
LKTSTPQAGEEAVLMPFADRRKFFEESSKSLSTSHLPGLTTHNNKPFIQRQKPIDQNFQSVSYRDLRCHP
LDQSYHSADQSYHAADQSYHSLSPLQSETPTYPECFATKGRDNSLCCKPVHHGDCDYHRTCSHPCSAQGT
VRHDPCICCSGEICPALLKRNLLPKCHNCRCHHHQCIRCTGCCHGPQHSAHEDSSMAPGNAWKSRKAAIQ
EFPVDKWKPITGNRKTSHSGREMAHSKAGFSLSTPFRPCIENPALDLSNYRAVSSLDILGDFKRASNKPE
ESSVYEDENSVASMPRPLRSRAFSESHISLEPQNTQAWGKHQRESFSKGSETQPDTLGARKKVFPPPRPP
PPNWEKYRLFRAAQLQQQQQQQQQQQQQQRCEEEEEKEQEEEGEKEEDLPPQYFSSELTGSCAPNTEEQP
QSLKMGHQEASRQGSQSLQEQEAFALHPSNFVPPVRGCTVPQPEKAQHPCYYGTHGLWRTTEQEATVTPK
QEFQHFSPPKGASGIPTSYSAYYNISVAKAELLNKLKQQPEMAEAGLGEEGVDYELAQKKIQLIESISRK
LSVLREAQRGLLDDINANAALGEEVEANLKAVCKSNEFEKYHLFIGDLDKVVNLLLSLSGRLARVENALN
SIDSESNQEKLVLIEKKQQLTNQLADAKELKEHVDGREKLVFGMVSRYLPQDQLQDYQHFVKMKSALIIE
QRELEEKIKLGEEQLKCLKESLHLGPSNF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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