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Report for CCDS8567.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8567.1 Public Homo sapiens 12 SPSB2 24 110 108 CCDS HistoryNCBI Gene:84727Re-query CCDS DB by CCDS ID:8567.1Re-query CCDS DB by GeneID:84727See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8567.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000524270.6 ENSP00000428338.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000524270.6Link to Ensembl Protein Viewer:ENSP00000428338.1Re-query CCDS DB by Nucleotide ID:ENST00000524270Re-query CCDS DB by Protein ID:ENSP00000428338
Original member Current member EBI ENST00000523102.5 ENSP00000430872.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000523102.5Link to Ensembl Protein Viewer:ENSP00000430872.1Re-query CCDS DB by Nucleotide ID:ENST00000523102Re-query CCDS DB by Protein ID:ENSP00000430872
Original member Current member NCBI NM_001146316.2 NP_001139788.1 Accepted alive Link to Nucleotide Sequence:NM_001146316.2Link to Protein Sequence:NP_001139788.1Re-query CCDS DB by Nucleotide ID:NM_001146316Re-query CCDS DB by Protein ID:NP_001139788Link to BLAST:NP_001139788.1
Original member Current member NCBI NM_001319670.2 NP_001306599.1 Accepted alive Link to Nucleotide Sequence:NM_001319670.2Link to Protein Sequence:NP_001306599.1Re-query CCDS DB by Nucleotide ID:NM_001319670Re-query CCDS DB by Protein ID:NP_001306599Link to BLAST:NP_001306599.1
Original member Current member NCBI NM_032641.4 NP_116030.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032641.4Link to Protein Sequence:NP_116030.1Re-query CCDS DB by Nucleotide ID:NM_032641Re-query CCDS DB by Protein ID:NP_116030Link to BLAST:NP_116030.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001139788.1 263 Q99619-1 263 100% 0 0
NP_001306599.1 263 Q99619-1 263 100% 0 0
NP_116030.1 263 Q99619-1 263 100% 0 0

Chromosomal Locations for CCDS 8567.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 6871192 6871319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 6872238 6872901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (792 nt):
ATGGGCCAGACAGCTCTGGCAGGGGGCAGCAGCAGCACCCCCACGCCACAGGCCCTGTACCCTGACCTCT
CCTGTCCCGAGGGCTTGGAAGAGCTGCTGTCTGCACCCCCTCCTGACCTGGGGGCCCAGCGGCGCCACGG
TTGGAACCCCAAAGACTGTTCAGAGAACATCGAGGTCAAGGAAGGAGGGTTGTACTTTGAGCGGCGGCCC
GTGGCCCAGAGCACTGATGGGGCCCGGGGTAAGAGGGGCTATTCAAGGGGCCTGCACGCCTGGGAGATCA
GCTGGCCCCTAGAGCAGAGGGGCACGCATGCCGTGGTGGGCGTGGCCACGGCCCTCGCCCCGCTGCAGAC
TGACCACTACGCGGCGCTGCTGGGCAGCAACAGCGAGTCGTGGGGCTGGGACATCGGGCGGGGGAAGCTG
TACCATCAGAGCAAGGGGCCCGGAGCCCCCCAGTATCCAGCGGGAACTCAGGGTGAGCAGCTGGAGGTGC
CAGAGAGACTGCTGGTGGTTCTGGACATGGAGGAGGGAACTCTGGGCTACGCTATTGGGGGCACCTACCT
GGGGCCAGCATTCCGCGGACTGAAGGGCAGGACCCTCTATCCGGCAGTAAGCGCTGTCTGGGGCCAGTGC
CAGGTCCGCATCCGCTACCTGGGCGAAAGGAGAGCGGAGCCACACTCCCTTCTGCACCTGAGCCGCCTGT
GTGTGCGCCACAACCTGGGGGATACCCGGCTCGGCCAGGTGTCTGCCCTGCCCTTGCCCCCTGCCATGAA
GCGCTACCTGCTCTACCAGTGA

Translation (263 aa):
MGQTALAGGSSSTPTPQALYPDLSCPEGLEELLSAPPPDLGAQRRHGWNPKDCSENIEVKEGGLYFERRP
VAQSTDGARGKRGYSRGLHAWEISWPLEQRGTHAVVGVATALAPLQTDHYAALLGSNSESWGWDIGRGKL
YHQSKGPGAPQYPAGTQGEQLEVPERLLVVLDMEEGTLGYAIGGTYLGPAFRGLKGRTLYPAVSAVWGQC
QVRIRYLGERRAEPHSLLHLSRLCVRHNLGDTRLGQVSALPLPPAMKRYLLYQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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