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Report for CCDS85595.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
85595.1 Public Mus musculus 8 Cdh16 23 108 98 CCDS HistoryNCBI Gene:12556Re-query CCDS DB by CCDS ID:85595.1Re-query CCDS DB by GeneID:12556See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 85595.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000212882.1 ENSMUSP00000148726.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000212882.1Link to Ensembl Protein Viewer:ENSMUSP00000148726.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000212882Re-query CCDS DB by Protein ID:ENSMUSP00000148726
Original member Current member NCBI NM_001252628.1 NP_001239557.1 Accepted alive Link to Nucleotide Sequence:NM_001252628.1Link to Protein Sequence:NP_001239557.1Re-query CCDS DB by Nucleotide ID:NM_001252628Re-query CCDS DB by Protein ID:NP_001239557Link to BLAST:NP_001239557.1

Chromosomal Locations for CCDS 85595.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 104602179 104602228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 104615134 104615250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 104616012 104616119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 104616265 104616507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 104616933 104617066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 104617625 104617866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 104617944 104618132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 104618207 104618283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 104618368 104618595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 104618900 104619050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 104619229 104619351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 104619875 104620071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 104621495 104621653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 104621965 104622103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 104622173 104622328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 104623048 104623137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 104623381 104623425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2448 nt):
ATGATCTCTGCCCGGCCGTGGCTACTTTACCTCTCTGTTATTCAGGCTTTCACCACTGAGGCCCAGCCTG
CAGAAAGCCTGCACACAGAAGTCCCTGAAAACTATGGTGGAAATTTCCCTTTTTACATACTCAAGCTACC
ACTACCCCTGGGGAGAGATGAAGGCCACATTGTCCTATCAGGAGACTCAAACACGGCAGATCAAAACACC
TTTGCTGTGGACACAGACTCTGGCTTTCTAGTGGCGACAAGGACCCTGGACCGGGAAGAGAAAGCAGAAT
ACCAACTACAGGTCACCTTGGAGTCTGAGGATGGACGTATCTTGTGGGGTCCACAGCTTGTGACTGTGCA
TGTGAAAGATGAGAATGACCAGGTACCCCAATTCTCCCAGGCCATCTACAGAGCTCAGCTGAGCCAGGGC
ACCAGGCCTGGGGTCCCCTTCCTCTTCCTTGAGGCTTCTGATGGGGATGCACCAGGCACAGCTAACTCCG
ACCTTCGCTTCCACATTCTGAGCCAGTCCCCACCTCAGCCTTTACCAGACATGTTCCAGCTGGACCCTCA
CCTAGGGGCTCTGGCTCTTAGTCCCAGTGGAAGCACCAGCCTAGACCATGCCCTTGAAGAGACTTACCAG
CTATTGGTACAGGTCAAGGACATGGGTGACCAGCCTTCAGGCCACCAGGCTATTGCAACTGTAGAGATCT
CCATAGTAGAGAACAGCTGGGCACCCCTAGAGCCTGTTCACCTGGCAGAGAATCTCAAAGTTGTGTACCC
ACACAGCATTGCCCAGGTGCACTGGAGTGGAGGAGACGTGCACTACCAGCTGGAGAGCCAGCCTCCAGGA
CCCTTCGATGTGGATACAGAGGGGATGCTCCATGTTACCATGGAGCTGGACCGGGAGGCCCAGGCTGAGT
ACCAGCTCCAAGTCCGAGCTCAGAATTCCCATGGTGAGGACTACGCAGAACCCCTGGAGTTGCAGGTGGT
GGTGATGGATGAAAACGACAATGCACCTGTCTGCTCCCCACATGACCCAACAGTCAACATCCCTGAGCTC
AGCCCCCCAGGAACTGAAATAGCCAGGCTCTCAGCAGAGGATTTGGATGCCCCTGGGTCACCCAATTCCC
ACATTGTATATCAGTTGTTGAGCCCTGAGCCTGAGGAGGGGGCTGAAAACAAAGCCTTCGAGTTAGATCC
GACCTCAGGCAGTGTAACACTGGGAACTGCCCCACTCCATGCTGGCCAGAGTATCCTGCTTCAGGTGCTG
GCTGTTGACCTAGCAGGATCAGAGAGTGGCCTCAGCAGCACATGTGAGGTGACAGTCATGGTGACAGACG
TCAACAACCATGCCCCTGAGTTCATCAATTCCCAGATTGGGCCTGTAACTCTTCCTGAGGATGTAAAACC
TGGGGCTCTGGTGGCAACACTCATGGCCACTGATGCTGACCTTGAACCTGCCTTCCGCCTTATGGACTTT
GCCATTGAAGAAGGAGACCCAGAAGGGATCTTTGACCTGTCCTGGGAGCCAGACTCCGACCATGTCCAGC
TCAGACTCCGGAAGAACCTCAGCTATGAGGCAGCTCCTGATCACAAGGTGGTGGTGGTCGTGAGTAACAT
AGAAGAACTGGTGGGCCCAGGCCCAGGCCCTGCAGCCACAGCCACAGTGACTATACTAGTGGAGAGGGTG
GTTGCTCCCCTCAAGTTGGACCAGGAGAGCTATGAGACCAGCATCCCAGTCAGCACCCCAGCTGGCTCCC
TCCTGCTGACCATCCAGCCCTCAGACCCCATGAGCAGAACCCTCAGGTTCTCCCTGGTCAATGACTCAGA
GGGCTGGCTCTGTATCAAGGAGGTGTCTGGGGAGGTACACACAGCCCAGTCCCTGCAGGGTGCCCAGCCT
GGAGACACATACACAGTGCTTGTGGAGGCCCAAGACACAGATAAGCCAGGACTGAGCACTTCTGCCACTG
TTGTGATCCACTTCCTGAAGGCCTCTCCTGTCCCAGCATTGACTCTGTCTGCTGGGCCCAGCCGACACCT
CTGTACACCCCGCCAAGACTACGGTGTAGTTGTGAGTGGGGTCAGTGAGGACCCTGACCTAGCCAACAGG
AATGGTCCCTACAGCTTTGCTCTCGGTCCCAATCCCACTGTGCAGCGGGATTGGCGCCTCCAGCCTCTCA
ACGATTCCCACGCCTACCTCACCTTGGCATTGCATTGGGTAGAGCCTGGTGAATACATGGTACCTGTGGT
TGTCCACCATGATACCCATATGTGGCAACTCCAGGTCAAAGTGATTGTGTGTCGCTGCAACGTGGAAGGC
CAATGTATGCGCAAGGTGGGTCGCATGAAGGGAATGCCCACGAAACTGTCAGCGGTGGGTGTCCTCTTGG
GCACCCTGGCAGCGATAGGTCACTTGCCCAGATGTTCACATTTAGGAAGCCTGTCTCCACATCCCTAG

Translation (815 aa):
MISARPWLLYLSVIQAFTTEAQPAESLHTEVPENYGGNFPFYILKLPLPLGRDEGHIVLSGDSNTADQNT
FAVDTDSGFLVATRTLDREEKAEYQLQVTLESEDGRILWGPQLVTVHVKDENDQVPQFSQAIYRAQLSQG
TRPGVPFLFLEASDGDAPGTANSDLRFHILSQSPPQPLPDMFQLDPHLGALALSPSGSTSLDHALEETYQ
LLVQVKDMGDQPSGHQAIATVEISIVENSWAPLEPVHLAENLKVVYPHSIAQVHWSGGDVHYQLESQPPG
PFDVDTEGMLHVTMELDREAQAEYQLQVRAQNSHGEDYAEPLELQVVVMDENDNAPVCSPHDPTVNIPEL
SPPGTEIARLSAEDLDAPGSPNSHIVYQLLSPEPEEGAENKAFELDPTSGSVTLGTAPLHAGQSILLQVL
AVDLAGSESGLSSTCEVTVMVTDVNNHAPEFINSQIGPVTLPEDVKPGALVATLMATDADLEPAFRLMDF
AIEEGDPEGIFDLSWEPDSDHVQLRLRKNLSYEAAPDHKVVVVVSNIEELVGPGPGPAATATVTILVERV
VAPLKLDQESYETSIPVSTPAGSLLLTIQPSDPMSRTLRFSLVNDSEGWLCIKEVSGEVHTAQSLQGAQP
GDTYTVLVEAQDTDKPGLSTSATVVIHFLKASPVPALTLSAGPSRHLCTPRQDYGVVVSGVSEDPDLANR
NGPYSFALGPNPTVQRDWRLQPLNDSHAYLTLALHWVEPGEYMVPVVVHHDTHMWQLQVKVIVCRCNVEG
QCMRKVGRMKGMPTKLSAVGVLLGTLAAIGHLPRCSHLGSLSPHP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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