NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS85594.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
85594.1 Public Mus musculus 8 Cdh16 23 108 98 CCDS HistoryNCBI Gene:12556Re-query CCDS DB by CCDS ID:85594.1Re-query CCDS DB by GeneID:12556See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 85594.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000163783.3 ENSMUSP00000129663.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000163783.3Link to Ensembl Protein Viewer:ENSMUSP00000129663.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000163783Re-query CCDS DB by Protein ID:ENSMUSP00000129663
Original member Current member NCBI NM_001252627.1 NP_001239556.1 Accepted alive Link to Nucleotide Sequence:NM_001252627.1Link to Protein Sequence:NP_001239556.1Re-query CCDS DB by Nucleotide ID:NM_001252627Re-query CCDS DB by Protein ID:NP_001239556Link to BLAST:NP_001239556.1

Chromosomal Locations for CCDS 85594.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 104614387 104614481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 104615134 104615250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 104616012 104616119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 104616265 104616507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 104616933 104617066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 104617625 104617866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 104617944 104618132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 104618207 104618283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 104618368 104618595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 104618900 104619050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 104619229 104619351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 104619875 104620071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 104621495 104621653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 104621965 104622103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 104622173 104622328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 104623381 104623425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2403 nt):
ATGATCTCTGCCCGGCCGTGGCTACTTTACCTCTCTGTTATTCAGCTACCACTACCCCTGGGGAGAGATG
AAGGCCACATTGTCCTATCAGGAGACTCAAACACGGCAGATCAAAACACCTTTGCTGTGGACACAGACTC
TGGCTTTCTAGTGGCGACAAGGACCCTGGACCGGGAAGAGAAAGCAGAATACCAACTACAGGTCACCTTG
GAGTCTGAGGATGGACGTATCTTGTGGGGTCCACAGCTTGTGACTGTGCATGTGAAAGATGAGAATGACC
AGGTACCCCAATTCTCCCAGGCCATCTACAGAGCTCAGCTGAGCCAGGGCACCAGGCCTGGGGTCCCCTT
CCTCTTCCTTGAGGCTTCTGATGGGGATGCACCAGGCACAGCTAACTCCGACCTTCGCTTCCACATTCTG
AGCCAGTCCCCACCTCAGCCTTTACCAGACATGTTCCAGCTGGACCCTCACCTAGGGGCTCTGGCTCTTA
GTCCCAGTGGAAGCACCAGCCTAGACCATGCCCTTGAAGAGACTTACCAGCTATTGGTACAGGTCAAGGA
CATGGGTGACCAGCCTTCAGGCCACCAGGCTATTGCAACTGTAGAGATCTCCATAGTAGAGAACAGCTGG
GCACCCCTAGAGCCTGTTCACCTGGCAGAGAATCTCAAAGTTGTGTACCCACACAGCATTGCCCAGGTGC
ACTGGAGTGGAGGAGACGTGCACTACCAGCTGGAGAGCCAGCCTCCAGGACCCTTCGATGTGGATACAGA
GGGGATGCTCCATGTTACCATGGAGCTGGACCGGGAGGCCCAGGCTGAGTACCAGCTCCAAGTCCGAGCT
CAGAATTCCCATGGTGAGGACTACGCAGAACCCCTGGAGTTGCAGGTGGTGGTGATGGATGAAAACGACA
ATGCACCTGTCTGCTCCCCACATGACCCAACAGTCAACATCCCTGAGCTCAGCCCCCCAGGAACTGAAAT
AGCCAGGCTCTCAGCAGAGGATTTGGATGCCCCTGGGTCACCCAATTCCCACATTGTATATCAGTTGTTG
AGCCCTGAGCCTGAGGAGGGGGCTGAAAACAAAGCCTTCGAGTTAGATCCGACCTCAGGCAGTGTAACAC
TGGGAACTGCCCCACTCCATGCTGGCCAGAGTATCCTGCTTCAGGTGCTGGCTGTTGACCTAGCAGGATC
AGAGAGTGGCCTCAGCAGCACATGTGAGGTGACAGTCATGGTGACAGACGTCAACAACCATGCCCCTGAG
TTCATCAATTCCCAGATTGGGCCTGTAACTCTTCCTGAGGATGTAAAACCTGGGGCTCTGGTGGCAACAC
TCATGGCCACTGATGCTGACCTTGAACCTGCCTTCCGCCTTATGGACTTTGCCATTGAAGAAGGAGACCC
AGAAGGGATCTTTGACCTGTCCTGGGAGCCAGACTCCGACCATGTCCAGCTCAGACTCCGGAAGAACCTC
AGCTATGAGGCAGCTCCTGATCACAAGGTGGTGGTGGTCGTGAGTAACATAGAAGAACTGGTGGGCCCAG
GCCCAGGCCCTGCAGCCACAGCCACAGTGACTATACTAGTGGAGAGGGTGGTTGCTCCCCTCAAGTTGGA
CCAGGAGAGCTATGAGACCAGCATCCCAGTCAGCACCCCAGCTGGCTCCCTCCTGCTGACCATCCAGCCC
TCAGACCCCATGAGCAGAACCCTCAGGTTCTCCCTGGTCAATGACTCAGAGGGCTGGCTCTGTATCAAGG
AGGTGTCTGGGGAGGTACACACAGCCCAGTCCCTGCAGGGTGCCCAGCCTGGAGACACATACACAGTGCT
TGTGGAGGCCCAAGACACAGATAAGCCAGGACTGAGCACTTCTGCCACTGTTGTGATCCACTTCCTGAAG
GCCTCTCCTGTCCCAGCATTGACTCTGTCTGCTGGGCCCAGCCGACACCTCTGTACACCCCGCCAAGACT
ACGGTGTAGTTGTGAGTGGGGTCAGTGAGGACCCTGACCTAGCCAACAGGAATGGTCCCTACAGCTTTGC
TCTCGGTCCCAATCCCACTGTGCAGCGGGATTGGCGCCTCCAGCCTCTCAACGATTCCCACGCCTACCTC
ACCTTGGCATTGCATTGGGTAGAGCCTGGTGAATACATGGTACCTGTGGTTGTCCACCATGATACCCATA
TGTGGCAACTCCAGGTCAAAGTGATTGTGTGTCGCTGCAACGTGGAAGGCCAATGTATGCGCAAGGTGGG
TCGCATGAAGGGAATGCCCACGAAACTGTCAGCGGTGGGTGTCCTCTTGGGCACCCTGGCAGCGATAGGC
TTCATTCTCATTCTTGTGTTCACGCACCTGGCCCTGGCAAGGAAGGACCTGGATCAGCCAGCAGACAGCG
TGCCTCTGAAGGCAGCGGTGTGA

Translation (800 aa):
MISARPWLLYLSVIQLPLPLGRDEGHIVLSGDSNTADQNTFAVDTDSGFLVATRTLDREEKAEYQLQVTL
ESEDGRILWGPQLVTVHVKDENDQVPQFSQAIYRAQLSQGTRPGVPFLFLEASDGDAPGTANSDLRFHIL
SQSPPQPLPDMFQLDPHLGALALSPSGSTSLDHALEETYQLLVQVKDMGDQPSGHQAIATVEISIVENSW
APLEPVHLAENLKVVYPHSIAQVHWSGGDVHYQLESQPPGPFDVDTEGMLHVTMELDREAQAEYQLQVRA
QNSHGEDYAEPLELQVVVMDENDNAPVCSPHDPTVNIPELSPPGTEIARLSAEDLDAPGSPNSHIVYQLL
SPEPEEGAENKAFELDPTSGSVTLGTAPLHAGQSILLQVLAVDLAGSESGLSSTCEVTVMVTDVNNHAPE
FINSQIGPVTLPEDVKPGALVATLMATDADLEPAFRLMDFAIEEGDPEGIFDLSWEPDSDHVQLRLRKNL
SYEAAPDHKVVVVVSNIEELVGPGPGPAATATVTILVERVVAPLKLDQESYETSIPVSTPAGSLLLTIQP
SDPMSRTLRFSLVNDSEGWLCIKEVSGEVHTAQSLQGAQPGDTYTVLVEAQDTDKPGLSTSATVVIHFLK
ASPVPALTLSAGPSRHLCTPRQDYGVVVSGVSEDPDLANRNGPYSFALGPNPTVQRDWRLQPLNDSHAYL
TLALHWVEPGEYMVPVVVHHDTHMWQLQVKVIVCRCNVEGQCMRKVGRMKGMPTKLSAVGVLLGTLAAIG
FILILVFTHLALARKDLDQPADSVPLKAAV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH