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Report for CCDS85564.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
85564.1 Public Mus musculus 8 Hmgxb4 23 108 98 CCDS HistoryNCBI Gene:70823Re-query CCDS DB by CCDS ID:85564.1Re-query CCDS DB by GeneID:70823See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 85564.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000109940.1 ENSMUSP00000105566.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109940.1Link to Ensembl Protein Viewer:ENSMUSP00000105566.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000109940Re-query CCDS DB by Protein ID:ENSMUSP00000105566
Original member NCBI NM_001316754.1 NP_001303683.1 Updated not alive Link to Nucleotide Sequence:NM_001316754.1Link to Protein Sequence:NP_001303683.1Re-query CCDS DB by Nucleotide ID:NM_001316754Re-query CCDS DB by Protein ID:NP_001303683
Current member NCBI NM_001316754.2 NP_001303683.1 Accepted alive Link to Nucleotide Sequence:NM_001316754.2Link to Protein Sequence:NP_001303683.1Re-query CCDS DB by Nucleotide ID:NM_001316754Re-query CCDS DB by Protein ID:NP_001303683Link to BLAST:NP_001303683.1

Chromosomal Locations for CCDS 85564.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 75016404 75016406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 75020244 75020325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 75021803 75021867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 75023199 75023304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 75023998 75024167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 75029488 75029610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 75029989 75030033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (594 nt):
ATGCCGAAAAAGAAGAACATGTCTGCCTACCAGGTATTCTGTAAGGAGTACCGGGTAACCATTGTGGCTG
ACCATCCAGGTATAGATTTTGGGGAACTTAGTAAAAAATTGGCTGAAGTATGGAAGCAGTTGCCAGAAAA
AGACAAACTGATCTGGAAGCAAAAGGCTCAGTATCTGCAGCACAAACAGAACAAAGCTGAAGCCACAACT
GTGAAGAGAAAAGCATCCAGCGCAGAAGGTTCCATGAAAGTCAGAGCCTCTTCTGTAGGAGTACTGTCAC
CCCAAAAGAAGTCCCCACCCACCACAATGCTTTTGCCAGCCTCACCAGCCAAAGCTCCTGAAACAGAGCC
CATTGATGTCGCTGCTCATCTCCAGTTGCTGGGAGAGTCCCTCAGCCTCATTGGACACCGCCTACAGGAG
ACAGAGGGCATGGTGGCAGTGTCTGGAAGCTTGTCAGTGCTCCTAGATTCCATTATCTGTGCTCTTGGCC
CTCTGGCATGCCTGACCACACAACTACCTGAACTGAACGGCTGTCCTAAACAGGTCTTGTCAAACACGCT
GGACAACATTGCATACATTATGCCTGGACTGTGA

Translation (197 aa):
MPKKKNMSAYQVFCKEYRVTIVADHPGIDFGELSKKLAEVWKQLPEKDKLIWKQKAQYLQHKQNKAEATT
VKRKASSAEGSMKVRASSVGVLSPQKKSPPTTMLLPASPAKAPETEPIDVAAHLQLLGESLSLIGHRLQE
TEGMVAVSGSLSVLLDSIICALGPLACLTTQLPELNGCPKQVLSNTLDNIAYIMPGL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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