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Report for CCDS85516.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
85516.1 Public Mus musculus 8 Adam9 23 108 98 CCDS HistoryNCBI Gene:11502Re-query CCDS DB by CCDS ID:85516.1Re-query CCDS DB by GeneID:11502See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 85516.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000208247.2 ENSMUSP00000146545.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000208247.2Link to Ensembl Protein Viewer:ENSMUSP00000146545.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000208247Re-query CCDS DB by Protein ID:ENSMUSP00000146545
Original member Current member NCBI NM_001270996.1 NP_001257925.1 Accepted alive Link to Nucleotide Sequence:NM_001270996.1Link to Protein Sequence:NP_001257925.1Re-query CCDS DB by Nucleotide ID:NM_001270996Re-query CCDS DB by Protein ID:NP_001257925Link to BLAST:NP_001257925.1

Chromosomal Locations for CCDS 85516.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 24950917 24951010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 24955932 24955999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 24962860 24963088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 24964903 24965035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 24966649 24966754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 24967149 24967229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 24970586 24970769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 24973029 24973134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 24978428 24978623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 24979423 24979515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 24981951 24982122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 24990267 24990400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 24991251 24991332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 24992074 24992243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 24993044 24993115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 24995110 24995175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 24996655 24996850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 24997743 24997819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 25003258 25003336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 25004779 25004837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 25006177 25006274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 25016685 25016781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2592 nt):
ATGGGGCCGCGCGCGCTCTCGCCCCTTGCCTCTCTGCGACTAAGGTGGCTGCTGGCGTGTGGCTTGCTGG
GCCCAGTCCTCGAGGCCGGGCGACCAGACTTGGAACAGACTGTCCATCTTTCTTCTTATGAAATTATTAC
TCCTTGGAGATTAACTAGAGAAAGAAGGGAAGCTCTGGGGCCCAGTTCACAGCAGATCTCTTACGTCATC
CAGGCCCAAGGAAAACAGCATATTATTCACTTGGAAAGAAACACAGACCTTTTACCTAATGATTTTGTAG
TTTACACCTACGACAAGGAAGGCTCCCTACTCTCTGACCATCCCAACGTACAGAGCCATTGTCACTATCG
AGGCTATGTGGAGGGAGTGCAGAATTCCGCGGTTGCTGTGAGCGCCTGCTTTGGACTCAGAGGCTTGCTG
CATTTGGAGAATGCCAGTTTTGGAATTGAACCTCTGCACAACAGCTCACACTTTGAGCACATATTTTACC
CCATGGATGGCATCCACCAGGAGCCTCTGAGATGTGGAGTCTCTAACAGGGACACAGAGAAGGAAGGCAC
ACAGGGGGATGAGGAGGAGCATCCGAGTGTCACTCAGCTGCTGCGCAGAAGAAGAGCTGTTCTACCACAG
ACCCGCTATGTGGAGCTGTTCATTGTTGTAGACAAGGAAAGGTACGACATGATGGGACGGAACCAGACTG
CTGTGAGAGAAGAGATGATTCGCTTAGCAAACTACCTGGATAGCATGTACATCATGTTAAACATTCGAAT
TGTGCTGGTTGGACTAGAAATTTGGACAGACAGAAATCCTATCAATATAATTGGAGGAGCTGGAGATGTG
CTGGGCAACTTTGTTCAGTGGCGGGAAAAGTTCCTTATAACTCGTTGGAGACACGACAGTGCACAGTTGG
TTTTGAAGAAAGGCTTTGGTGGAACTGCAGGAATGGCGTTTGTAGGAACAGTATGTTCAAGGAGCCACGC
AGGTGGGATCAATGTGTTTGGGCAAATCACTGTGGAGACATTTGCATCCATTGTTGCTCATGAATTGGGG
CATAACCTTGGAATGAATCATGATGATGGGAGAGAGTGTTTCTGTGGAGCAAAGAGCTGTATCATGAATT
CAGGAGCATCCGGGTCCAGAAACTTTAGCAGTTGCAGTGCGGAGGACTTTGAGAAGTTAACGTTGAATAA
GGGAGGAAGCTGCCTGCTTAACATCCCGAAGCCCGACGAAGCCTACAGCGCGCCCTCCTGTGGTAATAAG
CTGGTGGACCCTGGAGAGGAGTGTGACTGCGGCACAGCGAAGGAGTGTGAGGTGGACCCATGCTGTGAAG
GAAGCACTTGTAAGCTCAAGTCATTTGCTGAGTGTGCATATGGCGACTGTTGTAAAGATTGCCAGTTCCT
TCCAGGAGGCTCCATGTGCAGAGGGAAGACCAGTGAGTGTGATGTTCCTGAGTACTGCAACGGTTCCTCT
CAGTTCTGCCCGCCAGATGTCTTCATTCAGAATGGATATCCTTGCCAGAACAGCAAAGCCTACTGCTACA
ATGGCATGTGCCAATATTATGACGCGCAGTGTCAGGTCATCTTTGGTTCAAAGGCTAAGGCTGCCCCAAG
AGATTGCTTCATTGAAGTCAATTCTAAAGGTGACAGATTTGGCAACTGTGGTTTCTCCGGCAGTGAGTAC
AAGAAGTGTGCCACTGGGAACGCGCTGTGTGGAAAGCTTCAATGCGAGAATGTACAGGACATGCCGGTGT
TTGGAATAGTACCAGCTATCATTCAGACACCCAGTCGAGGCACCAAATGCTGGGGTGTGGATTTCCAGCT
TGGTTCCGACGTTCCAGACCCAGGGATGGTGAATGAAGGCACCAAATGTGATGCTGGCAAGATTTGCAGG
AATTTTCAGTGTGTAAATGCTTCTGTCCTGAATTATGACTGTGACATTCAGGGAAAATGTCATGGCCATG
GGGTGTGTAACAGCAATAAGAATTGTCACTGTGAAGACGGCTGGGCTCCCCCACACTGTGACACCAAAGG
ATATGGAGGAAGCGTGGACAGCGGGCCGACGTATAATGCAAAGAGCACAGCACTGAGGGACGGGCTTCTG
GTCTTCTTCTTCCTAATCGTCCCCCTTGTTGCGGCTGCCATTTTCCTCTTTATCAAGAGAGATGAACTAC
GGAAAACCTTCAGGAAGAAGAGATCACAAATGTCAGATGGCAGAAATCAAGCAAACGTCTCTAGACAGCC
AGGAGATCCTAGTATCTCCAGACCACCAGGGGGCCCAAATGTCTCCAGACCACCAGGGGGCCCAGGTGTC
TCCAGACCACCAGGGGGCCCAGGTGTCTCCAGACCACCAGGGGGCCCAGGTGTCTCCAGACCACCAGGGG
GCCCAGGTGTCTCCAGACCGCCAGGGGGCCCAGGTGTCTCCAGACCGCCACCTGGGCATGGAAACAGATT
CCCAGTACCAACCTACGCCGCCAAGCAGCCTGCGCAGTTCCCGTCAAGGCCACCTCCACCACAACCGAAA
ATATCTTCTCAGGGAAACTTGATTCCGGCTCGGCCCGCTCCTGCACCTCCTTTATATAGCTCCCTCACCT
GA

Translation (863 aa):
MGPRALSPLASLRLRWLLACGLLGPVLEAGRPDLEQTVHLSSYEIITPWRLTRERREALGPSSQQISYVI
QAQGKQHIIHLERNTDLLPNDFVVYTYDKEGSLLSDHPNVQSHCHYRGYVEGVQNSAVAVSACFGLRGLL
HLENASFGIEPLHNSSHFEHIFYPMDGIHQEPLRCGVSNRDTEKEGTQGDEEEHPSVTQLLRRRRAVLPQ
TRYVELFIVVDKERYDMMGRNQTAVREEMIRLANYLDSMYIMLNIRIVLVGLEIWTDRNPINIIGGAGDV
LGNFVQWREKFLITRWRHDSAQLVLKKGFGGTAGMAFVGTVCSRSHAGGINVFGQITVETFASIVAHELG
HNLGMNHDDGRECFCGAKSCIMNSGASGSRNFSSCSAEDFEKLTLNKGGSCLLNIPKPDEAYSAPSCGNK
LVDPGEECDCGTAKECEVDPCCEGSTCKLKSFAECAYGDCCKDCQFLPGGSMCRGKTSECDVPEYCNGSS
QFCPPDVFIQNGYPCQNSKAYCYNGMCQYYDAQCQVIFGSKAKAAPRDCFIEVNSKGDRFGNCGFSGSEY
KKCATGNALCGKLQCENVQDMPVFGIVPAIIQTPSRGTKCWGVDFQLGSDVPDPGMVNEGTKCDAGKICR
NFQCVNASVLNYDCDIQGKCHGHGVCNSNKNCHCEDGWAPPHCDTKGYGGSVDSGPTYNAKSTALRDGLL
VFFFLIVPLVAAAIFLFIKRDELRKTFRKKRSQMSDGRNQANVSRQPGDPSISRPPGGPNVSRPPGGPGV
SRPPGGPGVSRPPGGPGVSRPPGGPGVSRPPGGPGVSRPPPGHGNRFPVPTYAAKQPAQFPSRPPPPQPK
ISSQGNLIPARPAPAPPLYSSLT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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