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Report for CCDS855.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
855.2 Public Homo sapiens 1 PPM1J 24 110 108 CCDS HistoryNCBI Gene:333926Re-query CCDS DB by CCDS ID:855.2Re-query CCDS DB by GeneID:333926See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 855.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000309276.11 ENSP00000308926.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000309276.11Link to Ensembl Protein Viewer:ENSP00000308926.6Re-query CCDS DB by Nucleotide ID:ENST00000309276Re-query CCDS DB by Protein ID:ENSP00000308926
Original member Current member NCBI NM_005167.7 NP_005158.5 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005167.7Link to Protein Sequence:NP_005158.5Re-query CCDS DB by Nucleotide ID:NM_005167Re-query CCDS DB by Protein ID:NP_005158Link to BLAST:NP_005158.5

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_005158.5 505 Q5JR12-1 505 100% 0 0

Chromosomal Locations for CCDS 855.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 112710163 112710310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 112710460 112710611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 112710744 112710851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 112711008 112711071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 112711266 112711384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 112711971 112712055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 112712345 112712457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 112712744 112713031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 112713497 112713611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 112714976 112715301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1518 nt):
ATGCTAAACCGGGTGCGCTCGGCCGTGGCGCACCTGGTGAGCTCCGGGGGCGCTCCGCCTCCGCGCCCCA
AATCCCCGGACCTGCCCAACGCCGCCTCGGCGCCGCCCGCCGCCGCTCCAGAAGCGCCCAGGAGCCCTCC
CGCGAAGGCTGGGAGCGGGAGCGCGACGCCCGCGAAGGCTGTTGAGGCTCGAGCGAGCTTCTCCAGACCG
ACCTTTCTGCAGCTGAGCCCCGGGGGGCTGCGACGCGCCGATGACCACGCGGGCCGGGCTGTGCAAAGCC
CCCCGGACACGGGCCGCCGCCTGCCCTGGAGCACAGGCTACGCCGAGGTCATCAATGCTGGCAAGAGTCG
GCACAATGAGGACCAGGCTTGCTGTGAAGTGGTGTATGTGGAAGGTCGGAGGAGTGTTACAGGAGTACCT
AGGGAGCCTAGCCGAGGCCAGGGACTCTGCTTCTACTACTGGGGCCTATTTGATGGGCATGCAGGGGGCG
GAGCTGCTGAAATGGCCTCACGGCTCCTGCATCGCCATATCCGAGAGCAGCTAAAGGACCTGGTAGAGAT
ACTTCAGGACCCTTCGCCACCACCCCTCTGCCTCCCAACCACTCCGGGGACCCCAGATTCCTCCGATCCC
TCTCACTTGCTTGGCCCTCAGTCCTGCTGGTCTTCACAGAAGGAAGTGAGCCACGAGAGCCTGGTAGTGG
GGGCCGTTGAGAATGCCTTCCAGCTCATGGATGAGCAGATGGCCCGGGAGCGGCGTGGCCACCAAGTGGA
GGGGGGCTGCTGTGCACTGGTTGTGATCTACCTGCTAGGCAAGGTGTACGTGGCCAATGCAGGCGATAGC
AGGGCCATCATTGTCCGGAATGGTGAAATCATTCCAATGTCCCGGGAGTTTACCCCGGAGACTGAGCGCC
AGCGTCTTCAGCTGCTTGGCTTCCTGAAACCAGAGCTGCTAGGCAGTGAATTCACCCACCTTGAGTTCCC
CCGCAGAGTTCTGCCCAAGGAGCTGGGGCAGAGGATGTTGTACCGGGACCAGAACATGACCGGCTGGGCC
TACAAAAAGATCGAGCTGGAGGATCTCAGGTTTCCTCTGGTCTGTGGGGAGGGCAAAAAGGCTCGGGTGA
TGGCCACCATTGGGGTGACCCGAGGCTTGGGAGACCACAGCCTTAAGGTCTGCAGTTCCACCCTGCCCAT
CAAGCCCTTTCTCTCCTGCTTCCCTGAGGTACGAGTGTATGACCTGACACAATATGAGCACTGCCCAGAT
GATGTGCTAGTCCTGGGAACAGATGGCCTGTGGGATGTCACTACTGACTGTGAGGTAGCTGCCACTGTGG
ACAGGGTGCTGTCGGCCTATGAGCCTAATGACCACAGCAGGTATACAGCTCTGGCCCAAGCTCTGGTCCT
GGGGGCCCGGGGTACCCCCCGAGACCGTGGCTGGCGTCTCCCCAACAACAAGCTGGGTTCCGGGGATGAC
ATCTCTGTCTTCGTCATCCCCCTGGGAGGGCCAGGCAGTTACTCCTGA

Translation (505 aa):
MLNRVRSAVAHLVSSGGAPPPRPKSPDLPNAASAPPAAAPEAPRSPPAKAGSGSATPAKAVEARASFSRP
TFLQLSPGGLRRADDHAGRAVQSPPDTGRRLPWSTGYAEVINAGKSRHNEDQACCEVVYVEGRRSVTGVP
REPSRGQGLCFYYWGLFDGHAGGGAAEMASRLLHRHIREQLKDLVEILQDPSPPPLCLPTTPGTPDSSDP
SHLLGPQSCWSSQKEVSHESLVVGAVENAFQLMDEQMARERRGHQVEGGCCALVVIYLLGKVYVANAGDS
RAIIVRNGEIIPMSREFTPETERQRLQLLGFLKPELLGSEFTHLEFPRRVLPKELGQRMLYRDQNMTGWA
YKKIELEDLRFPLVCGEGKKARVMATIGVTRGLGDHSLKVCSSTLPIKPFLSCFPEVRVYDLTQYEHCPD
DVLVLGTDGLWDVTTDCEVAATVDRVLSAYEPNDHSRYTALAQALVLGARGTPRDRGWRLPNNKLGSGDD
ISVFVIPLGGPGSYS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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