NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS85449.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
85449.1 Public Mus musculus 7 Spef1l 23 108 98 CCDS HistoryNCBI Gene:381933Re-query CCDS DB by CCDS ID:85449.1Re-query CCDS DB by GeneID:381933See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 85449.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000209335.1 ENSMUSP00000148257.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000209335.1Link to Ensembl Protein Viewer:ENSMUSP00000148257.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000209335Re-query CCDS DB by Protein ID:ENSMUSP00000148257
Original member Current member NCBI NM_001347614.2 NP_001334543.1 Accepted alive Link to Nucleotide Sequence:NM_001347614.2Link to Protein Sequence:NP_001334543.1Re-query CCDS DB by Nucleotide ID:NM_001347614Re-query CCDS DB by Protein ID:NP_001334543Link to BLAST:NP_001334543.1

Chromosomal Locations for CCDS 85449.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 139975885 139975958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 139976475 139976673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 139977072 139977222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 139978034 139978145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 139978547 139978682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (672 nt):
ATGCTCAGTGCTTCCAAGCCGAGCTCAGCTTCGTTCCTGCCAACGCCTGGGGATATTCATAACCTCTGCG
CCTGGCTGGACCGGCTCCCACTCAGCCGCCCCAAGCGCCACTTGGCTCGGGACTTCAGTGATGGTGTGCT
GGTGGCCGAGATTGTGAAGCACTTCCGCCCTCGGCTGGTGGACTTGCACAGCTACGTCCCAGCCTGCAGT
ACAGACCAGAAGCTGAGCAACTGGAGCCTTCTCAACAGGAAAGTCTTTCGCAAGCTGCACTTGTGTATCT
CAGATAATGATATCCAAAGGGTGGTATCCAACAGGCCTGGAGTTATCGAGTCTATTCTATGTGCACTGAG
GGAGAAGATGGAGGCCAGGACTGTTCATGTAGGCTCAGCTGGTACAGCTGATCCAAGACACTCTGCTGTG
GATGCTGTCCGACCCTGGCGGGATCTTACCCCCAACCCACATACCTCTAAGATGCAAGATCCTGATGTGG
ATAACAGCAGCTTGTCAGAACCCCTCTGGGACTCCGGTGGAGAGCACCACTCTGTTCCCGAAAGCTGGGT
CCATGATGTTGAACTCCCAAACCTTCAAAAGAAGGCAGGGACTCAATTGAAGGGCTCTGGGATCACCTGG
TCAGCATCCAGCAGCAGCTGGAGGATAAGGAGCAAGCACTAG

Translation (223 aa):
MLSASKPSSASFLPTPGDIHNLCAWLDRLPLSRPKRHLARDFSDGVLVAEIVKHFRPRLVDLHSYVPACS
TDQKLSNWSLLNRKVFRKLHLCISDNDIQRVVSNRPGVIESILCALREKMEARTVHVGSAGTADPRHSAV
DAVRPWRDLTPNPHTSKMQDPDVDNSSLSEPLWDSGGEHHSVPESWVHDVELPNLQKKAGTQLKGSGITW
SASSSSWRIRSKH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH