NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS85177.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
85177.1 Public Mus musculus 6 Mgst1 23 108 98 CCDS HistoryNCBI Gene:56615Re-query CCDS DB by CCDS ID:85177.1Re-query CCDS DB by GeneID:56615See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 85177.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000118091.7 ENSMUSP00000112923.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000118091.7Link to Ensembl Protein Viewer:ENSMUSP00000112923.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000118091Re-query CCDS DB by Protein ID:ENSMUSP00000112923
Original member Current member NCBI NM_001347489.2 NP_001334418.1 Accepted alive Link to Nucleotide Sequence:NM_001347489.2Link to Protein Sequence:NP_001334418.1Re-query CCDS DB by Nucleotide ID:NM_001347489Re-query CCDS DB by Protein ID:NP_001334418Link to BLAST:NP_001334418.1

Chromosomal Locations for CCDS 85177.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 138141692 138141882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 138147659 138147815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 138150768 138150862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 138156132 138156378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (690 nt):
ATGACAGGGCTCCAGAGACAGGCAGGTGGGGTCTCCAGTCTCCATTGTACCACCTGGCCTTATTTATACC
CTACTCAAGCTTCTTTCCTTCAAAGTAGAAGAAAATGGTTTCTGTGTCGGAGTCTTTCATCCCAAGCTGT
TTTCAGTCAACTGGTGGGCATCCCTTTGCTCTCTCCTGACAGGCATCCTGGTCATTTGAAGACTGAGACC
AAGATTGGAAGCATGGCCGACCTCAGGCAGCTCATGGACAATGAGGTGTTGATGGCCTTTACCTCCTATG
CAACGATCATTCTTACCAAGATGATGTTCATGAGCTCTGCGACCGCATTCCAGAGGATAACCAACAAGGT
TTTTGCCAACCCAGAAGACTGCGCTGGCTTTGGCAAGGGAGAGAATGCCAAGAAGTTTGTTCGCACTGAC
GAGAAGGTGGAACGCGTGCGCAGAGCCCACCTGAATGATCTTGAAAACATCGTTCCCTTTCTCGGCATCG
GCCTCCTGTACTCCCTGAGTGGACCAGATCTCTCTACAGCCCTCATGCACTTCAGAATCTTTGTAGGTGC
TCGGATCTACCACACCATTGCTTACTTGACTCCCCTTCCTCAGCCAAACAGGGGCTTGGCATTTTTTGTT
GGCTATGGAGTTACTTTGTCAATGGCTTACAGGCTGCTAAGGAGCAGACTGTACTTGTAA

Translation (229 aa):
MTGLQRQAGGVSSLHCTTWPYLYPTQASFLQSRRKWFLCRSLSSQAVFSQLVGIPLLSPDRHPGHLKTET
KIGSMADLRQLMDNEVLMAFTSYATIILTKMMFMSSATAFQRITNKVFANPEDCAGFGKGENAKKFVRTD
EKVERVRRAHLNDLENIVPFLGIGLLYSLSGPDLSTALMHFRIFVGARIYHTIAYLTPLPQPNRGLAFFV
GYGVTLSMAYRLLRSRLYL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH