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Report for CCDS8513.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8513.1 Public Homo sapiens 12 ITFG2 24 110 108 CCDS HistoryNCBI Gene:55846Re-query CCDS DB by CCDS ID:8513.1Re-query CCDS DB by GeneID:55846See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8513.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000228799.7 ENSP00000228799.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000228799.7Link to Ensembl Protein Viewer:ENSP00000228799.2Re-query CCDS DB by Nucleotide ID:ENST00000228799Re-query CCDS DB by Protein ID:ENSP00000228799
Original member Current member NCBI NM_018463.4 NP_060933.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018463.4Link to Protein Sequence:NP_060933.3Re-query CCDS DB by Nucleotide ID:NM_018463Re-query CCDS DB by Protein ID:NP_060933Link to BLAST:NP_060933.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060933.3 447 Q969R8-1 447 100% 0 0

Chromosomal Locations for CCDS 8513.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 2812761 2812856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 2817223 2817318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 2817909 2817950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 2818106 2818277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 2820086 2820225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 2820724 2820872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 2821262 2821359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 2821543 2821596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 2821692 2821792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 2822794 2822911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 2823770 2823943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 2824090 2824193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1344 nt):
ATGAGGTCAGTTAGCTACGTGCAGCGCGTGGCGCTGGAGTTCAGCGGGAGCCTCTTCCCGCACGCAATCT
GCCTCGGAGACGTTGATAACGATACGTTAAATGAACTGGTGGTGGGAGACACCAGCGGGAAGGTGTCTGT
GTATAAAAATGATGACAGTCGGCCATGGCTCACCTGTTCCTGCCAGGGAATGCTGACTTGCGTTGGGGTT
GGAGACGTGTGTAATAAAGGAAAGAACCTGTTGGTGGCAGTGAGTGCTGAAGGCTGGTTTCATTTGTTTG
ACCTGACACCTGCCAAGGTGTTGGATGCTTCTGGGCACCACGAGACACTAATCGGAGAGGAGCAGCGTCC
AGTCTTCAAGCAGCACATCCCTGCCAACACCAAGGTCATGCTGATCAGCGACATCGATGGAGATGGGTGT
CGTGAGCTGGTGGTGGGCTACACAGACCGTGTGGTGCGAGCTTTCCGCTGGGAGGAGCTAGGTGAGGGTC
CTGAACATCTGACAGGGCAGCTGGTGTCCCTCAAGAAATGGATGCTGGAGGGTCAGGTGGACAGCCTCTC
AGTGACTCTGGGGCCACTGGGTCTTCCTGAACTGATGGTGTCTCAGCCAGGTTGTGCGTATGCAATTCTA
CTGTGTACCTGGAAAAAGGACACTGGGTCCCCTCCTGCCTCTGAAGGGCCCACGGATGGTAGTAGGGAGA
CCCCAGCTGCCCGAGACGTGGTGCTGCACCAGACATCTGGCCGTATCCACAACAAGAATGTCTCCACTCA
CCTAATTGGCAACATCAAACAAGGCCACGGCACTGAGAGTAGTGGCTCTGGCCTCTTTGCCCTGTGCACC
CTGGATGGGACACTGAAGCTCATGGAAGAAATGGAAGAAGCAGACAAGCTGCTGTGGTCAGTGCAGGTGG
ATCACCAGCTCTTTGCCCTGGAGAAACTGGATGTCACCGGCAACGGGCATGAGGAGGTAGTTGCATGCGC
CTGGGATGGACAGACATATATCATTGATCACAACCGCACCGTCGTCCGCTTCCAAGTGGATGAAAATATC
CGTGCCTTCTGTGCAGGCCTGTACGCCTGCAAAGAGGGCCGCAACAGCCCCTGCCTCGTATATGTCACTT
TCAACCAGAAGATCTATGTGTACTGGGAGGTGCAGCTGGAGCGGATGGAGTCTACCAATCTGGTGAAACT
GCTGGAGACCAAGCCGGAGTACCACAGCCTGCTGCAGGAGCTGGGCGTGGATCCTGACGACCTCCCTGTG
ACTCGTGCCCTGCTTCACCAAACGCTCTACCATCCAGACCAGCCACCACAGTGTGCTCCCTCAAGCCTCC
AGGATCCCACCTAG

Translation (447 aa):
MRSVSYVQRVALEFSGSLFPHAICLGDVDNDTLNELVVGDTSGKVSVYKNDDSRPWLTCSCQGMLTCVGV
GDVCNKGKNLLVAVSAEGWFHLFDLTPAKVLDASGHHETLIGEEQRPVFKQHIPANTKVMLISDIDGDGC
RELVVGYTDRVVRAFRWEELGEGPEHLTGQLVSLKKWMLEGQVDSLSVTLGPLGLPELMVSQPGCAYAIL
LCTWKKDTGSPPASEGPTDGSRETPAARDVVLHQTSGRIHNKNVSTHLIGNIKQGHGTESSGSGLFALCT
LDGTLKLMEEMEEADKLLWSVQVDHQLFALEKLDVTGNGHEEVVACAWDGQTYIIDHNRTVVRFQVDENI
RAFCAGLYACKEGRNSPCLVYVTFNQKIYVYWEVQLERMESTNLVKLLETKPEYHSLLQELGVDPDDLPV
TRALLHQTLYHPDQPPQCAPSSLQDPT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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