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Report for CCDS85038.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
85038.1 Public Mus musculus 6 Krba1 23 108 98 CCDS HistoryNCBI Gene:77827Re-query CCDS DB by CCDS ID:85038.1Re-query CCDS DB by GeneID:77827See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 85038.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000203371.2 ENSMUSP00000145256.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000203371.2Link to Ensembl Protein Viewer:ENSMUSP00000145256.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000203371Re-query CCDS DB by Protein ID:ENSMUSP00000145256
Original member Current member NCBI NM_001347153.1 NP_001334082.1 Accepted alive Link to Nucleotide Sequence:NM_001347153.1Link to Protein Sequence:NP_001334082.1Re-query CCDS DB by Nucleotide ID:NM_001347153Re-query CCDS DB by Protein ID:NP_001334082Link to BLAST:NP_001334082.1

Chromosomal Locations for CCDS 85038.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 48402977 48403010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 48403378 48403497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 48403991 48404140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 48405237 48405389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 48406297 48406431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 48406834 48407007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 48407673 48407822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 48408529 48408726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 48409170 48409343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 48409718 48409894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 48411642 48411794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 48412274 48412426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 48413078 48413272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 48413363 48413503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 48414056 48414151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 48414490 48414600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 48415576 48416390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3129 nt):
ATGCGGGAAAACTACGAGACGTTGGTGTCTGTGGGGACCTCTGAGCTGCTTCCTCTCTCTGCTTTCCTGT
CACCTGCAGAGGCTGGAGGAGCCACATCAGGAGAGAGCCACCAGGATAAGGGACAAAAACCCCATTTGGA
GCATAGTTCCCAGGGAGAGCAGCCTCAGCAGAGCCTACACCTCACCGCATTAGTGCAGCTGGTGAAGGAG
ATTCCAGAGTTCTTGTTTGGAGAAGTGAAGGGTACTGAGGACTACTCCGAGAGTGGGAGCACCAGTCTGG
ATGGGGAGCAAACAAGCCCCGAGGCTGTGGTTGTGGAAGCTTGCCCTCCCCGAGGCCTGCTCAATTCTCT
TCCGGAGAGCCCTGCAAGCCACCCCAGCCTGGCCACCACACCCACAGGCAGCTCAACTTCCGGTGGCCCT
CCTGGAGACTGGGCACACGGAAGCCCCTTACCTGCTATAGGAACTGATGATAAGCCATTATCTATAGAGA
AGGAAGGTGTAGGAGCCTCGAGAGAGACCTCCATTCATTCCACTCAAAGCCTGGGCCAGAGCAAGAGTTA
CCTAAGACAGGAGCGAGGCAGCATGGGAACAGGAACCCTTCCTGAGAACAGCCCATTGCAAGGCCTCATC
AACTGTTTGAAGGAGATCCTTGTGCCCAGACCCCAGCACCGGGGGACAGCCCCAGACTTGCCGCCTTCTC
TCCCTGGCTTGAGTGTGTTGAAGCAGACGAGAGCTGAGGTAGAGGCTGGGAGCCTGCCCTGCCCGGTGAA
GACAGAGGCAGCATCCGGAGATTGTCCCCTTCAGGGCCTGCTGAACTGTCTGAAGGAGATCCCAAAAGCT
CCAGACCGACGTCCCAGCCCCTCAGGAGCATCAGACTTGCAGCTGCAGGAGGACCCAGGGAAAAGACATT
CTGGAGGGATGAGACACCTCCAGACTCCTCCCCACCCTAGTCATGAAGCTGGCAGTATGCTTGCCACGGT
GAAGGTAGAAGATGGCTGGGCCCAGAGTCCCCCAGTGCCAGCATCCTGCCAGCTTAGCAGGCAAGGCTAT
AGCTCCTATTCCACTGGAGACAACAGAGAGGTCCGTGTGCCCCGCTGGGGCCCCATGACTCTAGCCAGCA
GGGCCTCAAGCTCACCCCTAGAAGCTCTGGAGGCCTGTCTGAAGGGCATCCCTCCAGGTGGGTCATCACC
TCTTCAGTCACTAGCCATCTCATGGTCCAGAAGTCCTCAGCTAGGAGATGCCGGGTCTCAGAGGTTTGAG
CTACAGCAACAAGGATCTCACAGTGAAGAAGCTACAAGGGAGCCACTTCTGCCTCTGAGCTTGCAGGGCT
ACATGAGAGAAGGACCTGGGGTTCAACCCTGTGGCTCCCAGGGTACCCCTACCAGCTTCTCCTCAGCCAG
CAGCAGTGATGGGGATCTGGATTTCAGGAGCCCCAGGAGCAGCCAGGGGCAACGGCTTGGGAAAGGCTAT
CTACCAGGAAACTCTCCACTCCAAGGCCTGGAGAACTGCCTGAGAGAGATCCCTATTCCCAGGCCACAGG
CTGCCTGGCCATGCTCCTCGGCTGTCAACAGGGGATTGAAGAGAACAGAGCCCAGGAACTGGACTGGAGA
CAGAGAAGGACTGAGAGGTGAGGCCTCTGAGCCACCCCACCTCAGACAGCGTCCTGGAGAAGTGCCCAGC
AGGAGTCTGCATCAAGACAGTCCACAGACCTGTACTTCCACCTGCCACCAAGTGACCACCAGGCCAGGAA
CATGGCAATGGCCACAAGAGGAGACAGCCACCATGCCCTCCCCTCTGCACCGCCTGGAGAACTCTCTGAG
GGGGATCTTGCCTGTGAGGCCCTTGCGTTTCACCTGCGTGACTGGCCCTGGCCCCAGTCCCAGCCCTTGC
TCCAGCTCCAGCTTCAGCAGCTCTGATGGAGAAGACCTAAGACCAGAGCCTGCATTTTGGCAGTCACCCC
TCCAGCAGAAAGACCAGCCTCCCTCCTGTAAGGACCCTGTTCGTCTGTGCCCTGTCTCTGGCGCATCTCC
AAGAGTCAACAGCAATAGCTGTTCTGCGGAAGACCGTGAGAGAACAGAGCCCAGGGACTGCAGCAGCCTC
AGCGCAGGAAGAGCAGAAGAGAAGCCCCACCCACCCAGAAGAGAAGATGGTGCAGAGCGCACACGCCAGC
CTGGGCCTGTCACCAATGCTGAAGGAAAAGGAGCAGCAGCTGGCCACCCATCGCCTGCCCCTCAGCTGGA
GGAAAAGCCTGAGCCCAAGGGTACTGAAGACTCCAGGGACCTGGAGCCTGGACATAGACCACCCAGTGCC
GCAGCCAGGACCCAAGGGAAGCTGCTCTCTGGAGACCCTCCGGAGTCACCTAGCAAGTCTCCCCTTCCCA
CAACTGTCTTGTCAAAATGGTCACCCACTTCTCTTCAGCCACCATGCCCCTGTGGCAGGTCCTTGCAGCA
GGAGCTGCATAACCTTGGTACTGCCCTCACGGACAAGCTAGACCGGCTTGCAGCAGCCTTGGCAGGCCTG
ACTCAGGAAGTTGCAACCATGAAGACCCAAATGGATCAACTGCGAAGGCACCCACGGAGCCTTGGCCCAA
AAGGTCAGGGTTCCTGGCAGTTGGCCCTCCCCCAGAGACCTCGCTGGGTCAACAGACTGGGCCACAGACA
TCTACCCTACTGGAGACAGAAGGGCCCCACCAGGCCCAGACCAAAGATTCTGCGGACCCAGGCAGAAGGC
TGCAAGACTAGTGACCGCCCAGGACTCTCTAGAGGGAAGGGCAGTTTGGTGCCTCAGCTGCCTCCAGAGG
CTTCCTTGGTAGAATCTTCCAGGCCCACCTGTAGTTCATCCCAGCAGATCTCCTCTACGCCTGGAGGCCA
CACTGTGCTGACTGCACACCCTCCTCTGGAGCACACTGCATGCCACCAGAATCCCCTCTCCCCTTCAGTG
CCTACTTCAGTGCAGGTCCCCCTTGTGGCCTCACCTGCAACCAGTGCAGACACAGAACCTCCGGCTGCTA
GAGTGGCAGCCATCAGCATTCCAAACCAGCCCAAGGAACCTGACAGCCTGCTAGGGGAAGCCCTCAGCAG
AGACCTCTGGGGAGGTGACCACCGGGACCCAAGGTGGGGGGCCCATTAA

Translation (1042 aa):
MRENYETLVSVGTSELLPLSAFLSPAEAGGATSGESHQDKGQKPHLEHSSQGEQPQQSLHLTALVQLVKE
IPEFLFGEVKGTEDYSESGSTSLDGEQTSPEAVVVEACPPRGLLNSLPESPASHPSLATTPTGSSTSGGP
PGDWAHGSPLPAIGTDDKPLSIEKEGVGASRETSIHSTQSLGQSKSYLRQERGSMGTGTLPENSPLQGLI
NCLKEILVPRPQHRGTAPDLPPSLPGLSVLKQTRAEVEAGSLPCPVKTEAASGDCPLQGLLNCLKEIPKA
PDRRPSPSGASDLQLQEDPGKRHSGGMRHLQTPPHPSHEAGSMLATVKVEDGWAQSPPVPASCQLSRQGY
SSYSTGDNREVRVPRWGPMTLASRASSSPLEALEACLKGIPPGGSSPLQSLAISWSRSPQLGDAGSQRFE
LQQQGSHSEEATREPLLPLSLQGYMREGPGVQPCGSQGTPTSFSSASSSDGDLDFRSPRSSQGQRLGKGY
LPGNSPLQGLENCLREIPIPRPQAAWPCSSAVNRGLKRTEPRNWTGDREGLRGEASEPPHLRQRPGEVPS
RSLHQDSPQTCTSTCHQVTTRPGTWQWPQEETATMPSPLHRLENSLRGILPVRPLRFTCVTGPGPSPSPC
SSSSFSSSDGEDLRPEPAFWQSPLQQKDQPPSCKDPVRLCPVSGASPRVNSNSCSAEDRERTEPRDCSSL
SAGRAEEKPHPPRREDGAERTRQPGPVTNAEGKGAAAGHPSPAPQLEEKPEPKGTEDSRDLEPGHRPPSA
AARTQGKLLSGDPPESPSKSPLPTTVLSKWSPTSLQPPCPCGRSLQQELHNLGTALTDKLDRLAAALAGL
TQEVATMKTQMDQLRRHPRSLGPKGQGSWQLALPQRPRWVNRLGHRHLPYWRQKGPTRPRPKILRTQAEG
CKTSDRPGLSRGKGSLVPQLPPEASLVESSRPTCSSSQQISSTPGGHTVLTAHPPLEHTACHQNPLSPSV
PTSVQVPLVASPATSADTEPPAARVAAISIPNQPKEPDSLLGEALSRDLWGGDHRDPRWGAH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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