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Report for CCDS85038.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
85038.1 |
Public |
Mus musculus |
6 |
Krba1 |
23 |
108 |
98 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:77827](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:85038.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:77827](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 6 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 85038.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000203371.2 |
ENSMUSP00000145256.1 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000203371.2](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000145256.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000203371](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000145256](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001347153.1 |
NP_001334082.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001347153.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001334082.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001347153](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001334082](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001334082.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 85038.1
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (3129 nt): ATGCGGGAAAACTACGAGACGTTGGTGTCTGTGGGGACCTCTGAGCTGCTTCCTCTCTCTGCTTTCCTGT CACCTGCAGAGGCTGGAGGAGCCACATCAGGAGAGAGCCACCAGGATAAGGGACAAAAACCCCATTTGGA GCATAGTTCCCAGGGAGAGCAGCCTCAGCAGAGCCTACACCTCACCGCATTAGTGCAGCTGGTGAAGGAG ATTCCAGAGTTCTTGTTTGGAGAAGTGAAGGGTACTGAGGACTACTCCGAGAGTGGGAGCACCAGTCTGG ATGGGGAGCAAACAAGCCCCGAGGCTGTGGTTGTGGAAGCTTGCCCTCCCCGAGGCCTGCTCAATTCTCT TCCGGAGAGCCCTGCAAGCCACCCCAGCCTGGCCACCACACCCACAGGCAGCTCAACTTCCGGTGGCCCT CCTGGAGACTGGGCACACGGAAGCCCCTTACCTGCTATAGGAACTGATGATAAGCCATTATCTATAGAGA AGGAAGGTGTAGGAGCCTCGAGAGAGACCTCCATTCATTCCACTCAAAGCCTGGGCCAGAGCAAGAGTTA CCTAAGACAGGAGCGAGGCAGCATGGGAACAGGAACCCTTCCTGAGAACAGCCCATTGCAAGGCCTCATC AACTGTTTGAAGGAGATCCTTGTGCCCAGACCCCAGCACCGGGGGACAGCCCCAGACTTGCCGCCTTCTC TCCCTGGCTTGAGTGTGTTGAAGCAGACGAGAGCTGAGGTAGAGGCTGGGAGCCTGCCCTGCCCGGTGAA GACAGAGGCAGCATCCGGAGATTGTCCCCTTCAGGGCCTGCTGAACTGTCTGAAGGAGATCCCAAAAGCT CCAGACCGACGTCCCAGCCCCTCAGGAGCATCAGACTTGCAGCTGCAGGAGGACCCAGGGAAAAGACATT CTGGAGGGATGAGACACCTCCAGACTCCTCCCCACCCTAGTCATGAAGCTGGCAGTATGCTTGCCACGGT GAAGGTAGAAGATGGCTGGGCCCAGAGTCCCCCAGTGCCAGCATCCTGCCAGCTTAGCAGGCAAGGCTAT AGCTCCTATTCCACTGGAGACAACAGAGAGGTCCGTGTGCCCCGCTGGGGCCCCATGACTCTAGCCAGCA GGGCCTCAAGCTCACCCCTAGAAGCTCTGGAGGCCTGTCTGAAGGGCATCCCTCCAGGTGGGTCATCACC TCTTCAGTCACTAGCCATCTCATGGTCCAGAAGTCCTCAGCTAGGAGATGCCGGGTCTCAGAGGTTTGAG CTACAGCAACAAGGATCTCACAGTGAAGAAGCTACAAGGGAGCCACTTCTGCCTCTGAGCTTGCAGGGCT ACATGAGAGAAGGACCTGGGGTTCAACCCTGTGGCTCCCAGGGTACCCCTACCAGCTTCTCCTCAGCCAG CAGCAGTGATGGGGATCTGGATTTCAGGAGCCCCAGGAGCAGCCAGGGGCAACGGCTTGGGAAAGGCTAT CTACCAGGAAACTCTCCACTCCAAGGCCTGGAGAACTGCCTGAGAGAGATCCCTATTCCCAGGCCACAGG CTGCCTGGCCATGCTCCTCGGCTGTCAACAGGGGATTGAAGAGAACAGAGCCCAGGAACTGGACTGGAGA CAGAGAAGGACTGAGAGGTGAGGCCTCTGAGCCACCCCACCTCAGACAGCGTCCTGGAGAAGTGCCCAGC AGGAGTCTGCATCAAGACAGTCCACAGACCTGTACTTCCACCTGCCACCAAGTGACCACCAGGCCAGGAA CATGGCAATGGCCACAAGAGGAGACAGCCACCATGCCCTCCCCTCTGCACCGCCTGGAGAACTCTCTGAG GGGGATCTTGCCTGTGAGGCCCTTGCGTTTCACCTGCGTGACTGGCCCTGGCCCCAGTCCCAGCCCTTGC TCCAGCTCCAGCTTCAGCAGCTCTGATGGAGAAGACCTAAGACCAGAGCCTGCATTTTGGCAGTCACCCC TCCAGCAGAAAGACCAGCCTCCCTCCTGTAAGGACCCTGTTCGTCTGTGCCCTGTCTCTGGCGCATCTCC AAGAGTCAACAGCAATAGCTGTTCTGCGGAAGACCGTGAGAGAACAGAGCCCAGGGACTGCAGCAGCCTC AGCGCAGGAAGAGCAGAAGAGAAGCCCCACCCACCCAGAAGAGAAGATGGTGCAGAGCGCACACGCCAGC CTGGGCCTGTCACCAATGCTGAAGGAAAAGGAGCAGCAGCTGGCCACCCATCGCCTGCCCCTCAGCTGGA GGAAAAGCCTGAGCCCAAGGGTACTGAAGACTCCAGGGACCTGGAGCCTGGACATAGACCACCCAGTGCC GCAGCCAGGACCCAAGGGAAGCTGCTCTCTGGAGACCCTCCGGAGTCACCTAGCAAGTCTCCCCTTCCCA CAACTGTCTTGTCAAAATGGTCACCCACTTCTCTTCAGCCACCATGCCCCTGTGGCAGGTCCTTGCAGCA GGAGCTGCATAACCTTGGTACTGCCCTCACGGACAAGCTAGACCGGCTTGCAGCAGCCTTGGCAGGCCTG ACTCAGGAAGTTGCAACCATGAAGACCCAAATGGATCAACTGCGAAGGCACCCACGGAGCCTTGGCCCAA AAGGTCAGGGTTCCTGGCAGTTGGCCCTCCCCCAGAGACCTCGCTGGGTCAACAGACTGGGCCACAGACA TCTACCCTACTGGAGACAGAAGGGCCCCACCAGGCCCAGACCAAAGATTCTGCGGACCCAGGCAGAAGGC TGCAAGACTAGTGACCGCCCAGGACTCTCTAGAGGGAAGGGCAGTTTGGTGCCTCAGCTGCCTCCAGAGG CTTCCTTGGTAGAATCTTCCAGGCCCACCTGTAGTTCATCCCAGCAGATCTCCTCTACGCCTGGAGGCCA CACTGTGCTGACTGCACACCCTCCTCTGGAGCACACTGCATGCCACCAGAATCCCCTCTCCCCTTCAGTG CCTACTTCAGTGCAGGTCCCCCTTGTGGCCTCACCTGCAACCAGTGCAGACACAGAACCTCCGGCTGCTA GAGTGGCAGCCATCAGCATTCCAAACCAGCCCAAGGAACCTGACAGCCTGCTAGGGGAAGCCCTCAGCAG AGACCTCTGGGGAGGTGACCACCGGGACCCAAGGTGGGGGGCCCATTAA
Translation (1042 aa): MRENYETLVSVGTSELLPLSAFLSPAEAGGATSGESHQDKGQKPHLEHSSQGEQPQQSLHLTALVQLVKE IPEFLFGEVKGTEDYSESGSTSLDGEQTSPEAVVVEACPPRGLLNSLPESPASHPSLATTPTGSSTSGGP PGDWAHGSPLPAIGTDDKPLSIEKEGVGASRETSIHSTQSLGQSKSYLRQERGSMGTGTLPENSPLQGLI NCLKEILVPRPQHRGTAPDLPPSLPGLSVLKQTRAEVEAGSLPCPVKTEAASGDCPLQGLLNCLKEIPKA PDRRPSPSGASDLQLQEDPGKRHSGGMRHLQTPPHPSHEAGSMLATVKVEDGWAQSPPVPASCQLSRQGY SSYSTGDNREVRVPRWGPMTLASRASSSPLEALEACLKGIPPGGSSPLQSLAISWSRSPQLGDAGSQRFE LQQQGSHSEEATREPLLPLSLQGYMREGPGVQPCGSQGTPTSFSSASSSDGDLDFRSPRSSQGQRLGKGY LPGNSPLQGLENCLREIPIPRPQAAWPCSSAVNRGLKRTEPRNWTGDREGLRGEASEPPHLRQRPGEVPS RSLHQDSPQTCTSTCHQVTTRPGTWQWPQEETATMPSPLHRLENSLRGILPVRPLRFTCVTGPGPSPSPC SSSSFSSSDGEDLRPEPAFWQSPLQQKDQPPSCKDPVRLCPVSGASPRVNSNSCSAEDRERTEPRDCSSL SAGRAEEKPHPPRREDGAERTRQPGPVTNAEGKGAAAGHPSPAPQLEEKPEPKGTEDSRDLEPGHRPPSA AARTQGKLLSGDPPESPSKSPLPTTVLSKWSPTSLQPPCPCGRSLQQELHNLGTALTDKLDRLAAALAGL TQEVATMKTQMDQLRRHPRSLGPKGQGSWQLALPQRPRWVNRLGHRHLPYWRQKGPTRPRPKILRTQAEG CKTSDRPGLSRGKGSLVPQLPPEASLVESSRPTCSSSQQISSTPGGHTVLTAHPPLEHTACHQNPLSPSV PTSVQVPLVASPATSADTEPPAARVAAISIPNQPKEPDSLLGEALSRDLWGGDHRDPRWGAH
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