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Report for CCDS84987.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
84987.1 Public Mus musculus 5 Iqce 23 108 98 CCDS HistoryNCBI Gene:74239Re-query CCDS DB by CCDS ID:84987.1Re-query CCDS DB by GeneID:74239See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 84987.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000077890.11 ENSMUSP00000077050.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000077890.11Link to Ensembl Protein Viewer:ENSMUSP00000077050.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000077890Re-query CCDS DB by Protein ID:ENSMUSP00000077050
Original member Current member NCBI NM_001347517.1 NP_001334446.1 Accepted alive Link to Nucleotide Sequence:NM_001347517.1Link to Protein Sequence:NP_001334446.1Re-query CCDS DB by Nucleotide ID:NM_001347517Re-query CCDS DB by Protein ID:NP_001334446Link to BLAST:NP_001334446.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001334446.1 761 Q6PCQ0-2 761 100% 0 0

Chromosomal Locations for CCDS 84987.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 140665366 140665493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140666008 140666208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140669022 140669105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140670467 140670567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140671344 140671465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140671807 140671926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140674337 140674360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140675078 140675248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140677416 140677506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140678074 140678178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140680716 140680945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140682402 140682457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140683376 140683539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140686045 140686094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140686328 140686400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140687785 140687855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140689813 140689863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140689956 140690069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140691600 140691670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140693415 140693543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140697008 140697053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140699685 140699732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140702182 140702217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2286 nt):
ATGAGCCTGGGCACCACAGATATAGCCTCGGAGACGGGAGATGACAGTCTGTCTGCTATTACCTTTGAAT
CTGACATTGAGTCGAAAACAAAAAGGAAAAGTTTCCACAAACCTCCTTCCACATCACCAAAGTCGCCCTA
CTACTCCAAACCCAGAAAAGTGACCTCCTGGCGATCTCTGAAGACGGCAGGGAGCATGCCTCTGAGTAGC
AGAATGTCCTTGACCCCACAGAAGCTGTGGCTGGGATCCTCGAAACAGGGTCACGTCTCTGGGACTTCCG
TCTACAGAGAGAAGGAGGACATGTACGACGAGATCATCGAGTTGAAGAAGTCCTTACATATGCAGAAAAG
TGATGTGGATCTGATGAGAACAAAGCTTCGGCGCTTGGAAGAGGAGAACAGCAGAAAGGATCGGCAGATA
GAACAGCTTCTGGATCCAAGTCGAGGCCCAGACTTCGTGCGAACCTTGGCAGAGAAGAAGCCTGACACGG
GCTGGGTCATCACCGGGCTCAAACAAAGGATCTTCAGGCTGGAGCAGCAATGCAAGGAGAAGGACAACAC
TATCAACAAACTGCAGACGGACATGAAGACCACCAACCTGGAGGAGATGCGCATTGCCATGGAAACATAC
TACGAAGAGATCCATCGTCTGCAGACCCTCCTGGCGAGTTCTGAAGCCACAGGAAAGAAGCCCATGGTGG
AGAAGAAACTGGGTGTGAAGAGGCAGAAGAAGATGAGCAGTGCCCTGCTGAACCTAACACGGAGTGTGCA
GGAGCTGACCGAGGAGAACCAGAGCCTGAAGGAGGACCTGGACCGCATGCTGAGCAATTCACCCACCATC
TCCAAAATAAAGGGTTACGGGGACTGGAGCAAGCCCCGGCTGCTGAGACGCATCGCAGAGCTAGAAAAGA
AAGTGAGTTCCTCAGAAAGCCCAAAGCAATCGACTTCAGAGCTGGTGAATCCGAATCCCCTGGTCCGCTC
CCCATCCAACATCTCAGTGCAAAAGCAGCCGAAAGGGGACCAGTCCCCAGAGGACCTGCCCAAGGTGGCC
CCGTGTGAGGAACAAGAGCATCTCCAAGGAACCGTGAAGAGCCTGAGAGAGGAGCTGGGTGCACTGCAGG
AGCAGCTGCTGGAGAAAGACCTGGAGATGAAGCAGCTGCTACAGTCCAAGATCGACCTGGAGAAGGAGTT
GGAGACAGCCAGGGAAGGCGAGAAGGGGAGGCAGGAGCAGGAGCAGGCTTTGAGGGAGGAAGTTGAAGCA
CTCACCAAAAAATGTCAAGAACTGGAAGAAGCTAAGAGAGAAGAGAAAAACTCCTTCGTAGCAGTGACTC
ATGAGGCTCATCCAGAGCTCCATGCCCCCTCGCCCTGCAGCAGGCACTCCGAGCCAGACTCTGACAATAG
TGCTGGTGAGGAGGGTAGCTCCCAACCCCCTGCCCCATGCTCTGAAGAGAGGAGAGAGGCTGCCATTAGG
ACCCTGCAGGCGCAGTGGAAGGCCCACAGGCGCAAGAAAAGAGAAGCAGCTCTGGATGAGGCAGCGACTG
TGCTCCAGGCAGCCTTCAGGGGACACCTAGCTCGTTCGAAGCTTGTACGCAGCAAAGTCCCAGACTCCAG
GTCTCCCAGCCTGCCGGGCCTTCTCAGCCCTCTTAACCAGAGTTCTCCTGCGCCCCGTGTCCTAAGCCCC
ATCTCCCCGGCTGAAGAGAACCCAACACAAGAGGAGGCTGTCATCGTTATCCAGTCCATCCTCCGTGGAT
ACCTGGCCCAGGCCAGGTTCATTGCCAGCTGCTGTCGAGAGATTGCGGCGTCCTCTCAGAGGGAAACTGT
TTCATTGACACCCTCAGGATCTGCCTCCCCACCCTCCCTCAGAGCTTCTCCCGGAAAGAACAGCGAGGCG
AGCAGTGGGGAGGCTGCGAAGGACGAAGATGAGGCAGAGGAACCGCCTGACCTGCAGCCCTACTCAGGAG
TGATCCGCAAGGAGCTCTGTGCCTCGGAGGAGCTGAGGGAGACCTCTGCATCTGAACCTGCCCCCTCCGT
CCCCTACTCCGCCCAAGGTGGCCACGGGGACTGCCCGTCCTCATCCAGTCTGGAGGCTGTGCCCAGTATG
AAGGATGCCATGTGTGAGGAAAGGAGCAGCAGCCCTAGAAGCGCAGGGCCATCCTTGGCTGAGCCCTCTC
CCCCAGAACTGCAGCCCTTGTCACCACCACCTGTGGAGGACATCTGCTCGGATGACTCAGATGACATTAT
CTTTTCGCCATTTCTGCCCAGGAAGAAAAGCCCCTCCCCGTTCTAA

Translation (761 aa):
MSLGTTDIASETGDDSLSAITFESDIESKTKRKSFHKPPSTSPKSPYYSKPRKVTSWRSLKTAGSMPLSS
RMSLTPQKLWLGSSKQGHVSGTSVYREKEDMYDEIIELKKSLHMQKSDVDLMRTKLRRLEEENSRKDRQI
EQLLDPSRGPDFVRTLAEKKPDTGWVITGLKQRIFRLEQQCKEKDNTINKLQTDMKTTNLEEMRIAMETY
YEEIHRLQTLLASSEATGKKPMVEKKLGVKRQKKMSSALLNLTRSVQELTEENQSLKEDLDRMLSNSPTI
SKIKGYGDWSKPRLLRRIAELEKKVSSSESPKQSTSELVNPNPLVRSPSNISVQKQPKGDQSPEDLPKVA
PCEEQEHLQGTVKSLREELGALQEQLLEKDLEMKQLLQSKIDLEKELETAREGEKGRQEQEQALREEVEA
LTKKCQELEEAKREEKNSFVAVTHEAHPELHAPSPCSRHSEPDSDNSAGEEGSSQPPAPCSEERREAAIR
TLQAQWKAHRRKKREAALDEAATVLQAAFRGHLARSKLVRSKVPDSRSPSLPGLLSPLNQSSPAPRVLSP
ISPAEENPTQEEAVIVIQSILRGYLAQARFIASCCREIAASSQRETVSLTPSGSASPPSLRASPGKNSEA
SSGEAAKDEDEAEEPPDLQPYSGVIRKELCASEELRETSASEPAPSVPYSAQGGHGDCPSSSSLEAVPSM
KDAMCEERSSSPRSAGPSLAEPSPPELQPLSPPPVEDICSDDSDDIIFSPFLPRKKSPSPF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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