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Report for CCDS84976.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
84976.1 Public Mus musculus 5 Col26a1 23 108 98 CCDS HistoryNCBI Gene:140709Re-query CCDS DB by CCDS ID:84976.1Re-query CCDS DB by GeneID:140709See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 84976.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000111103.1 ENSMUSP00000106732.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111103.1Link to Ensembl Protein Viewer:ENSMUSP00000106732.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000111103Re-query CCDS DB by Protein ID:ENSMUSP00000106732
Original member Current member NCBI NM_001346699.1 NP_001333628.1 Accepted alive Link to Nucleotide Sequence:NM_001346699.1Link to Protein Sequence:NP_001333628.1Re-query CCDS DB by Nucleotide ID:NM_001346699Re-query CCDS DB by Protein ID:NP_001333628Link to BLAST:NP_001333628.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001333628.1 438 Q91VF6-2 438 100% 0 0

Chromosomal Locations for CCDS 84976.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 136743046 136743206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136744163 136744247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136747021 136747068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136748324 136748359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136749265 136749317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136751669 136751752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136754193 136754345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136754915 136755013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136757632 136757788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136765302 136765363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136836654 136836751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136847484 136847606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 136882850 136883007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1317 nt):
ATGAAGCTGGTTTTGCTGTTACCATGGGCGTGCTGCTGCTTGTGCGGGTCGGCGCTGGCCACCGGCTTTC
TCTACCCGTTCCCGGCAGCAGCCTTGCAGCAGCACGGCTACCCGGAGCAGGGCGCCGGCTCCCCCGGCAA
CGGCTACTCGAGTCGCCGGCACTGGTGCCATCACACGGTGACAAGGACAGTGTCCTGCCAGGTGCAGAAT
GGCTCCGAGACGGTGGTCCAGCGAGTCTACCAGAGCTGCCGGTGGCCTGGGCCCTGTGCCAACCTCGTGA
GGACTCTCATTAGACCGACCTACCGGGTTTCCTACCGCACGGTGACTGCGCTGGAGTGGAGGTGTTGCCC
AGGATTCACCGGAAGCAACTGCGAGGAAGAATGTATGAACTGTACCCGGCTTAGCGACATGAGTGAACGG
CTGACCACGCTGGAGGCCAAGGTCCTCTTGCTGGAAGCAGCTGAGCAGCCTTCAGGTCCAGACAATGACC
TGCCACCCCCGCAGAGCACCCCACCAACCTGGAACGAGGACTTCCTGCCAGACGCCATTCCCATCGCACA
TCCAGGGCCCCGGAGGAGAAGACCCACAGGTCCAGCTGGACCTCCAGGACAGATGGGACCACCTGGACCT
GCAGGACCTCCAGGTTCCAAAGGTGAACAGGGCCAGACAGGAGAGAAGGGCCCAGTGGGACCTCCAGGTC
TCTTGGGACCACCGGGGCCACGCGGGCTCCCTGGAGAGATGGGGCGCCCTGGTCCACCAGGCCCTCCTGG
CCCAGCAGGAAGTCCTGGCCTCTTGCCAAACACTCCCCAAGGCGTCCTGTATTCCCTGCAGACACCAACA
GACAAGGAGAATGGAGACTCCCAGCTGAACCCTGCTGTTGTAGACACAGTGCTGACTGGCATCCCAGGTC
CCCGGGGTCCCCCAGGCCCCCCTGGTCCCCCAGGACCACACGGCCCCCCAGGACCCCCAGGAGCACCTGG
ATCCCAGGGCCTGGTGGATGAGCGGGTTGTGGCAAGGCCATCTGGTGAGCCCAGTGTGAAGGAAGAAGAG
GACAAAGCCAGCGCTGCAGAGGGAGAAGGTGTGCAGCAGCTTCGCGAGGCCCTGAAGATCCTGGCAGAGA
GGGTCCTTATCCTTGAGCATATGATTGGAGTCCATGATCCCCTGGCCTCTCCTGAGGGTGGCTCTGGGCA
GGATGCAGCCCTGAGAGCCAATCTCAAGATGAAGCGAGGAGGTCCTCGACCTGACGGCATCCTGGCTGCC
CTGCTGGGCCCCGACCCTGCACAAAAGAGCGCAGACCAGGCTGGCGACAGGAAGTAA

Translation (438 aa):
MKLVLLLPWACCCLCGSALATGFLYPFPAAALQQHGYPEQGAGSPGNGYSSRRHWCHHTVTRTVSCQVQN
GSETVVQRVYQSCRWPGPCANLVRTLIRPTYRVSYRTVTALEWRCCPGFTGSNCEEECMNCTRLSDMSER
LTTLEAKVLLLEAAEQPSGPDNDLPPPQSTPPTWNEDFLPDAIPIAHPGPRRRRPTGPAGPPGQMGPPGP
AGPPGSKGEQGQTGEKGPVGPPGLLGPPGPRGLPGEMGRPGPPGPPGPAGSPGLLPNTPQGVLYSLQTPT
DKENGDSQLNPAVVDTVLTGIPGPRGPPGPPGPPGPHGPPGPPGAPGSQGLVDERVVARPSGEPSVKEEE
DKASAAEGEGVQQLREALKILAERVLILEHMIGVHDPLASPEGGSGQDAALRANLKMKRGGPRPDGILAA
LLGPDPAQKSADQAGDRK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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