NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS849.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
849.1 Public Homo sapiens 1 ST7L 24 110 108 CCDS HistoryNCBI Gene:54879Re-query CCDS DB by CCDS ID:849.1Re-query CCDS DB by GeneID:54879See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 849.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000490067.5 ENSP00000417140.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000490067.5Link to Ensembl Protein Viewer:ENSP00000417140.1Re-query CCDS DB by Nucleotide ID:ENST00000490067Re-query CCDS DB by Protein ID:ENSP00000417140
Original member Current member NCBI NM_138727.4 NP_620055.1 Accepted alive Link to Nucleotide Sequence:NM_138727.4Link to Protein Sequence:NP_620055.1Re-query CCDS DB by Nucleotide ID:NM_138727Re-query CCDS DB by Protein ID:NP_620055Link to BLAST:NP_620055.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_620055.1 558 Q8TDW4-3 558 100% 0 0

Chromosomal Locations for CCDS 849.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 112526013 112526111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 112541951 112542090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 112550601 112550693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 112555868 112556018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 112576986 112577088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 112578345 112578417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 112581992 112582106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 112582375 112582472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 112583972 112584126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 112591525 112591603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 112597971 112598086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 112600794 112600848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 112610841 112611003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 112616813 112616844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 112618909 112619113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1677 nt):
ATGGCGGACCGTGGCGGCGTGGGTGAAGCCGCAGCTGTTGGAGCGTCTCCTGCATCTGTCCCTGGCCTAA
ACCCGACGCTAGGCTGGAGGGAGCGACTGCGGGCCGGGCTGGCGGGGACTGGGGCCTCGTTGTGGTTCGT
GGCGGGGCTGGGGCTGCTTTACGCCCTGAGGATCCCTTTGAGGCTGTGTGAGAATTTGGCAGCGGGGACC
TCTTCATTGATATCAGGACTAATATTTATATTTGAATGGTGGTACTTCCATAAGCATGGCACATCTTTTA
TTGAGCAAGTATCTGTAAGCCATTTGCAACCACTGATGGGAGGAACAGAGAGCAGCATTTCAGAACCAGG
TTCTCCTTCGAGGAACAGAGAAAATGAAACCAGCAGACAGAATTTGTCAGAATGTAAGGTATGGAGAAAC
CCTCTAAATCTTTTCAGAGGAGCAGAATATAGGAGATACACTTGGGTGACTGGTAAAGAGCCACTTACAT
ACTATGACATGAACCTGTCAGCTCAGGACCATCAGACCTTTTTCACCTGTGACACAGATTTTTTACGTCC
TTCAGACACAGTTATGCAGAAGGCTTGGAGGGAAAGAAATCCTCCAGCTCGAATCAAAGCAGCCTATCAA
GCTTTAGAATTAAACAATGACTGTGCCACTGCATATGTTCTACTGGCTGAGGAAGAAGCAACAACTATTG
TAGATGCTGAAAGGTTATTTAAACAGGCACTCAAGGCAGGAGAAACAATTTATAGGCAGTCACAGCAGTG
CCAGCACCAAAGTCCTCAGCATGAAGCTCAACTGAGGAGAGATACCAATGTACTGGTATATATTAAAAGA
AGATTGGCAATGTGTGCAAGAAAATTAGGAAGAATAAGAGAAGCAGTAAAAATAATGAGAGATTTGATGA
AAGAATTTCCTCCTCTTACCATGTTGAACATCCATGAAAATCTCTTAGAATCACTTTTAGAATTACAGGC
CTATCCAGATGTTCAGGCAGTCCTAGCAAAATATGATGATATAAGCCTTCCAAAGTCAGCAGCAATCTGT
TACACAGCAGCACTGTTGAAGACAAGGACTGTTTCAGAAAAATTCTCTCCAGAAACAGCCTCCAGAAGAG
GATTAAGCACAGCAGAAATTAATGCCGTGGAAGCAATTCATAGAGCTGTGGAATTTAATCCTCATGTTCC
AAAATATTTATTAGAGATGAAAAGTTTAATTTTACCTCCAGAACACATTCTGAAACGGGGTGATAGTGAA
GCAATTGCCTATGCTTTCTTTCATCTTCAGCACTGGAAACGAATAGAAGGTGCTCTTAATCTGTTACAGT
GTACATGGGAAGGCACTTTTAGAATGATTCCATACCCGTTAGAGAAAGGACATCTATTTTACCCTTATCC
CAGCTGCACAGAGACGGCTGATAGAGAGCTATTACCTACCTTTCATCATGTTTCTGTTTACCCAAAAAAG
GAGCTTCCTTTGTTCATCCATTTCACAGCAGGATTTTGCTCTTCTACAGCAATGATAGCCATTCTCACTC
ACCAGTTTCCTGAAATCATGGGTATTTTTGCTAAAGCTGTGCTGGGACTCTGGTGCCCCCAACCCTGGGC
ATCCTCAGGCTTTGAGGAGAATACACAGGATTTGAAGTCAGAAGACCTAGGTTTGAGTTCTGGCTGA

Translation (558 aa):
MADRGGVGEAAAVGASPASVPGLNPTLGWRERLRAGLAGTGASLWFVAGLGLLYALRIPLRLCENLAAGT
SSLISGLIFIFEWWYFHKHGTSFIEQVSVSHLQPLMGGTESSISEPGSPSRNRENETSRQNLSECKVWRN
PLNLFRGAEYRRYTWVTGKEPLTYYDMNLSAQDHQTFFTCDTDFLRPSDTVMQKAWRERNPPARIKAAYQ
ALELNNDCATAYVLLAEEEATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEAQLRRDTNVLVYIKR
RLAMCARKLGRIREAVKIMRDLMKEFPPLTMLNIHENLLESLLELQAYPDVQAVLAKYDDISLPKSAAIC
YTAALLKTRTVSEKFSPETASRRGLSTAEINAVEAIHRAVEFNPHVPKYLLEMKSLILPPEHILKRGDSE
AIAYAFFHLQHWKRIEGALNLLQCTWEGTFRMIPYPLEKGHLFYPYPSCTETADRELLPTFHHVSVYPKK
ELPLFIHFTAGFCSSTAMIAILTHQFPEIMGIFAKAVLGLWCPQPWASSGFEENTQDLKSEDLGLSSG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH