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Report for CCDS8480.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8480.2 Public Homo sapiens 11 TP53AIP1 24 110 108 CCDS HistoryNCBI Gene:63970Re-query CCDS DB by CCDS ID:8480.2Re-query CCDS DB by GeneID:63970See the combined annotation on chromosome 11 in Sequence Viewer

Public Note for CCDS 8480.1
The coding region has been updated to represent an alternative splicing pattern that is more supported by the available transcript and protein data.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 8480.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000531399.6 ENSP00000432743.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000531399.6Link to Ensembl Protein Viewer:ENSP00000432743.1Re-query CCDS DB by Nucleotide ID:ENST00000531399Re-query CCDS DB by Protein ID:ENSP00000432743
Original member Current member NCBI NM_022112.3 NP_071395.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_022112.3Link to Protein Sequence:NP_071395.2Re-query CCDS DB by Nucleotide ID:NM_022112Re-query CCDS DB by Protein ID:NP_071395Link to BLAST:NP_071395.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_071395.2 124 Q9HCN2-1 124 100% 0 0

Chromosomal Locations for CCDS 8480.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 128935591 128935712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 128936538 128936649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 128937678 128937818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (375 nt):
ATGGGATCTTCCTCTGAGGCGAGCTTCAGATCTGCTCAAGCTTCCTGCAGTGGGGCCAGGAGGCAGGGCC
TGGGCAGGGGAGACCAGAACCTCTCGGTGATGCCTCCGAATGGCAGGGCTCAGACACACACACCTGGCTG
GGTTTCAGATCCCTTAGTTTTGGGTGCCCAAGTTCACGGAGGGTGCCGGGGAATAGAAGCTCTGTCAGTC
TCGTCTGGATCTTGGTCCTCAGCAACTGTCTGGATCCTGACAGGCCTTGGTCTAGGTCTCTCCAGGCCTT
TCCTTCCTGGAGCCACAGTGCTTAGAGACAGGCCACTGGGGTCAGCATTTGAGCTCAGCTATGATCAGAA
AAAAGCACCGTTGAGGTTGCAGTGA

Translation (124 aa):
MGSSSEASFRSAQASCSGARRQGLGRGDQNLSVMPPNGRAQTHTPGWVSDPLVLGAQVHGGCRGIEALSV
SSGSWSSATVWILTGLGLGLSRPFLPGATVLRDRPLGSAFELSYDQKKAPLRLQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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