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Report for CCDS84775.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
84775.1 Public Mus musculus 4 Osbpl9 23 108 98 CCDS HistoryNCBI Gene:100273Re-query CCDS DB by CCDS ID:84775.1Re-query CCDS DB by GeneID:100273See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 84775.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000194478.5 ENSMUSP00000141991.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000194478.5Link to Ensembl Protein Viewer:ENSMUSP00000141991.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000194478Re-query CCDS DB by Protein ID:ENSMUSP00000141991
Original member Current member NCBI NM_001346502.2 NP_001333431.1 Accepted alive Link to Nucleotide Sequence:NM_001346502.2Link to Protein Sequence:NP_001333431.1Re-query CCDS DB by Nucleotide ID:NM_001346502Re-query CCDS DB by Protein ID:NP_001333431Link to BLAST:NP_001333431.1

Chromosomal Locations for CCDS 84775.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 109062258 109062332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 109062465 109062600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 109063366 109063457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 109064563 109064641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 109065624 109065764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 109065865 109065928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 109066128 109066238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 109066915 109066999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 109068363 109068534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 109071943 109072028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 109072814 109072932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 109073037 109073149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 109083089 109083248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 109086327 109086431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 109087395 109087485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 109098503 109098553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 109099921 109099950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 109101116 109101163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 109102497 109102592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 109107881 109107949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 109133744 109133820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 109156655 109156733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 109172274 109172324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 109202105 109202215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2241 nt):
ATGGCGTCCATCGTGGAAGGGCCGCTGAGCAAATGGACTAACGTGATGAAGGGATGGCAGTATCGTTGGT
TCGTGCTGGACTACAATGCAGGGCTGCTCTCCTACTACACGTCCAAGGACAAAATGATGAGAGGCTCTCG
AAGAGGATGCGTTAGACTCAGAGGAGCTGTGATTGGTATAGACGACGAGGACGACAGCACCTTCACAATC
ACTGTCGATCAGAAAACCTTCCACTTCCAGGCTCGAGATGCAGACGAGCGAGAGAAGTGGATCCATGCCT
TAGAAGAAACTATTCTTCGCCATACTCTTCAGCTTCAAATCAGTACCACACTTGCTTTTTTCCAGTCTTC
TGGTATCTCTCCAGTTCTTGAATTTTCAAAAATAATTGGTTTGGATTCAGGATTCATCCCCAGTGTCCAA
GACTTTGATAAGAAACTTACCGAGGCTGACGCGTACCTGCAGATCTTGATAGAACAATTAAAGCTTTTTG
ATGACAAGCTTCAAAATTGTAAAGATGATGAACAGAGAAAGAAAGTTGAAACTCTCAAAGACACAACAAA
TAGCATGGTAGAATCAATTAAACACTGCATTGTGTTGCTACAGATTGCTAAAAGTACTATTAATCCTGTA
GATGCAATATACCAGCCTAGTCCCTTGGAACCTGTGATCAGCACAATGCCTTCCCAGACTGCCTTACCTC
CAGAACCCGCTCAGTTGTGTAAGTCAGAGCAGCGTCCATCTTCCTTACCTGTTGGACCTGTGTTAGCTAC
CTTGGGACATCATCAGACTCCAACACCAAATAGTACAGGCAGTGGGAACTCACCACCTAGCAGCAGTCTG
ACTCCTCCCAGCCATGTCAACTTGTCTCCAAATACAGTCCCAGAGTTCTCTTACTCTAGCAGTGAAGATG
AGTTCTATGATGCTGATGAATTCCATCAAAGTGGCTCGTCCCCAAAGCGCTTAATAGATTCTTCTGGATC
TGCCTCAGTCTTGACACACAGCAGCTCCGGAAATAGCTTAAAACGCCCAGATACCACAGAGTCTCTGAAT
TCCTCCATGTCCAATGGCACAAGCGATGCTGATCTTTTTGACTCACATGACGACAGAGATGATGATGGGG
AGGCTGGGTCAGTGGAGGAGCACAAGAGCGTTATCATGCACCTCTTATCACAAGTCAGGCTGGGGATGGA
CCTCACAAAGGTAGTTCTTCCAACGTTTATTCTCGAGAGAAGATCTCTGTTAGAAATGTATGCAGACTTT
TTCGCACATCCAGACCTGTTCGTGAGCATTAGTGATCAGAAGGATCCCAGGGATCGAATGGTTCAGGTTG
TGAAATGGTACCTCTCGGCCTTCCATGCAGGAAGGAGAGGATCGGTGGCCAAAAAGCCGTACAATCCTAT
TTTGGGTGAGATCTTTCAGTGTCACTGGACGTTGCCGAATGATACTGAAGAGAACGCAGAGCTCGTTTCA
GAAGGGCCGGTTCCCTGGGTTTCTAAGAACAGTGTAACATTTGTGGCTGAGCAAGTTTCCCACCATCCGC
CCATTTCAGCCTTTTATGCTGAGTGTTTTAACAAGAAGATACAATTCAATGCTCATATCTGGACTAAATC
AAAATTCCTTGGGATGTCAATTGGGGTACACAACATAGGTCAGGGCTGTGTCTCGTGTCTGGAGTACGAT
GAGCACTACATCCTCACGTTCCCCAATGGCTATGGAAGGTCTATCCTGACAGTGCCCTGGGTGGAATTGG
GAGGAGAATGCAATATCAACTGCTCCAAAACGGGTTACAGCGCAAACATCGTCTTCCACACTAAGCCTTT
CTATGGGGGCAAGAAGCACAGAATTACTGCAGAGATTTTTTCTCCGAATGACAAGAAATCCTTCTGCTCA
ATTGAAGGGGAATGGAATGGTATCATGTATGCAAAATACGCAACAGGGGAAAACACTGTCTTTGTAGACA
CCAAGAAATTGCCTATAATCAAGAAAAAGGTGAGGAAGTTGGAAGATCAGAATGAGTATGAGTCCCGCAG
CCTTTGGAAGGATGTCACTTTCAATTTAAAAATCAGAGACATTGATGCAGCAACGGAAGCAAAGCACAGA
CTTGAAGAAAGACAAAGAGCAGAAGCCCGAGAAAGGAAGGAGAAGGAAATTCAGTGGGAGACGAGGCTCT
TTCACGAGGATGGCGAATGCTGGGTTTACGATGAGCCTTTACTGAAGCGTCTTGGTGCTGTGAAGCATTA
G

Translation (746 aa):
MASIVEGPLSKWTNVMKGWQYRWFVLDYNAGLLSYYTSKDKMMRGSRRGCVRLRGAVIGIDDEDDSTFTI
TVDQKTFHFQARDADEREKWIHALEETILRHTLQLQISTTLAFFQSSGISPVLEFSKIIGLDSGFIPSVQ
DFDKKLTEADAYLQILIEQLKLFDDKLQNCKDDEQRKKVETLKDTTNSMVESIKHCIVLLQIAKSTINPV
DAIYQPSPLEPVISTMPSQTALPPEPAQLCKSEQRPSSLPVGPVLATLGHHQTPTPNSTGSGNSPPSSSL
TPPSHVNLSPNTVPEFSYSSSEDEFYDADEFHQSGSSPKRLIDSSGSASVLTHSSSGNSLKRPDTTESLN
SSMSNGTSDADLFDSHDDRDDDGEAGSVEEHKSVIMHLLSQVRLGMDLTKVVLPTFILERRSLLEMYADF
FAHPDLFVSISDQKDPRDRMVQVVKWYLSAFHAGRRGSVAKKPYNPILGEIFQCHWTLPNDTEENAELVS
EGPVPWVSKNSVTFVAEQVSHHPPISAFYAECFNKKIQFNAHIWTKSKFLGMSIGVHNIGQGCVSCLEYD
EHYILTFPNGYGRSILTVPWVELGGECNINCSKTGYSANIVFHTKPFYGGKKHRITAEIFSPNDKKSFCS
IEGEWNGIMYAKYATGENTVFVDTKKLPIIKKKVRKLEDQNEYESRSLWKDVTFNLKIRDIDAATEAKHR
LEERQRAEARERKEKEIQWETRLFHEDGECWVYDEPLLKRLGAVKH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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