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Report for CCDS8470.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8470.1 Public Homo sapiens 11 FAM118B 24 110 108 CCDS HistoryNCBI Gene:79607Re-query CCDS DB by CCDS ID:8470.1Re-query CCDS DB by GeneID:79607See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8470.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000533050.6 ENSP00000433343.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000533050.6Link to Ensembl Protein Viewer:ENSP00000433343.1Re-query CCDS DB by Nucleotide ID:ENST00000533050Re-query CCDS DB by Protein ID:ENSP00000433343
Original member Current member NCBI NM_024556.4 NP_078832.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_024556.4Link to Protein Sequence:NP_078832.1Re-query CCDS DB by Nucleotide ID:NM_024556Re-query CCDS DB by Protein ID:NP_078832Link to BLAST:NP_078832.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_078832.1 351 Q9BPY3 351 100% 0 0

Chromosomal Locations for CCDS 8470.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 126235002 126235087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 126240792 126241044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 126250506 126250733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 126254305 126254433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 126256567 126256852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 126261425 126261484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 126262120 126262133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1056 nt):
ATGGCTTCTACAGGGAGCCAGGCCTCTGATATAGACGAGATTTTTGGATTCTTCAACGATGGCGAACCTC
CCACCAAAAAGCCCAGGAAGCTGCTTCCAAGCTTAAAAACTAAGAAGCCTCGAGAACTTGTGCTAGTGAT
TGGAACAGGCATTAGTGCTGCAGTTGCGCCCCAAGTTCCAGCCCTCAAATCCTGGAAGGGGTTAATTCAG
GCCTTACTGGATGCTGCCATTGATTTTGATCTTTTAGAAGATGAGGAGAGCAAAAAGTTTCAGAAATGTC
TCCATGAAGACAAGAACCTGGTCCATGTTGCCCATGACCTTATCCAGAAACTCTCTCCTCGTACCAGTAA
TGTTCGATCCACATTTTTCAAGGACTGTTTATATGAAGTATTTGATGACTTGGAGTCAAAGATGGAAGAT
TCTGGAAAACAGCTACTTCAGTCAGTTCTCCACCTGATGGAAAATGGAGCCCTCGTATTAACTACAAATT
TTGATAATCTCTTGGAACTGTATGCAGCAGATCAGGGGAAACAGCTTGAATCCCTTGACCTTACTGATGA
GAAAAAGGTCCTCGAGTGGGCTCAGGAGAAGCGTAAGCTGAGCGTGTTGCATATTCACGGAGTCTACACC
AACCCTAGTGGCATTGTCCTTCATCCGGCTGGATATCAGAACGTGCTCAGGAACACTGAAGTCATGAGAG
AAATTCAGAAACTCTACGAAAACAAGTCATTTCTTTTCCTGGGCTGTGGCTGGACTGTGGATGACACCAC
TTTCCAGGCCCTTTTCTTGGAGGCTGTCAAGCATAAATCTGACCTAGAACATTTCATGCTGGTTCGGAGA
GGAGACGTAGATGAGTTCAAAAAGCTTCGAGAAAACATGCTGGACAAGGGGATTAAAGTCATCTCCTATG
GAGATGACTATGCCGATCTTCCAGAATATTTCAAGCGACTGACATGTGAGATCTCCACAAGGGGTACATC
AGCAGGGATGGTGAGAGAAGGTCAGCTAAATGGCTCATCTGCAGCACACAGTGAAATAAGAGGCTGTAGT
ACATGA

Translation (351 aa):
MASTGSQASDIDEIFGFFNDGEPPTKKPRKLLPSLKTKKPRELVLVIGTGISAAVAPQVPALKSWKGLIQ
ALLDAAIDFDLLEDEESKKFQKCLHEDKNLVHVAHDLIQKLSPRTSNVRSTFFKDCLYEVFDDLESKMED
SGKQLLQSVLHLMENGALVLTTNFDNLLELYAADQGKQLESLDLTDEKKVLEWAQEKRKLSVLHIHGVYT
NPSGIVLHPAGYQNVLRNTEVMREIQKLYENKSFLFLGCGWTVDDTTFQALFLEAVKHKSDLEHFMLVRR
GDVDEFKKLRENMLDKGIKVISYGDDYADLPEYFKRLTCEISTRGTSAGMVREGQLNGSSAAHSEIRGCS
T


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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