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Report for CCDS84610.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
84610.1 Public Mus musculus 3 Rbis 23 108 98 CCDS HistoryNCBI Gene:69126Re-query CCDS DB by CCDS ID:84610.1Re-query CCDS DB by GeneID:69126See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 84610.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000108365.3 ENSMUSP00000104002.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108365.3Link to Ensembl Protein Viewer:ENSMUSP00000104002.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000108365Re-query CCDS DB by Protein ID:ENSMUSP00000104002
Original member Current member NCBI NM_001347206.1 NP_001334135.1 Accepted alive Link to Nucleotide Sequence:NM_001347206.1Link to Protein Sequence:NP_001334135.1Re-query CCDS DB by Nucleotide ID:NM_001347206Re-query CCDS DB by Protein ID:NP_001334135Link to BLAST:NP_001334135.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001334135.1 139 Q0VG62-1 139 100% 0 0

Chromosomal Locations for CCDS 84610.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 14606346 14606408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 14607177 14607293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 14609541 14609657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 14611017 14611139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (420 nt):
ATGCTGGCTGCGGCGGCTCCGAGGGCTCTGTTCTGCCAACTTCTAGTCCTCTATCGATTCCTCGTGGGCG
ATCGAACTCCCGGGGTGCCCAGGCCCGAAACCTTGCGGCCACCCCTTAGCAGGACAATGGCCAAGAACAA
ATTAAAAGGGCAGAAGTCCAGGAATGTATTTCATATAGCTAGCCACAAAACTTTCAAGGCTAAAAACAAG
GCAAAACCAGTTACTACTAATCTTAAGAAGATAAACATTATGAATCATGAAAAAGTCAACAGAATGAACA
GAGCTTTTGTAAATATACAGAAAGAACTTGCAAACTTCTCAAAAAGCCTTTCTCTTAAATCTGTGCAGAA
AGAGCTGAAGCACCATGAAAATGAACCAGCTAACGTTGATGAAGCGACACGACTAATGGCTCAGTTGTAA

Translation (139 aa):
MLAAAAPRALFCQLLVLYRFLVGDRTPGVPRPETLRPPLSRTMAKNKLKGQKSRNVFHIASHKTFKAKNK
AKPVTTNLKKINIMNHEKVNRMNRAFVNIQKELANFSKSLSLKSVQKELKHHENEPANVDEATRLMAQL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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