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Report for CCDS845.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
845.1 Public Homo sapiens 1 CTTNBP2NL 24 110 108 CCDS HistoryNCBI Gene:55917Re-query CCDS DB by CCDS ID:845.1Re-query CCDS DB by GeneID:55917See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 845.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000271277.11 ENSP00000271277.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000271277.11Link to Ensembl Protein Viewer:ENSP00000271277.6Re-query CCDS DB by Nucleotide ID:ENST00000271277Re-query CCDS DB by Protein ID:ENSP00000271277
Original member Current member NCBI NM_018704.3 NP_061174.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018704.3Link to Protein Sequence:NP_061174.1Re-query CCDS DB by Nucleotide ID:NM_018704Re-query CCDS DB by Protein ID:NP_061174Link to BLAST:NP_061174.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061174.1 639 Q9P2B4 639 100% 0 0

Chromosomal Locations for CCDS 845.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 112416166 112416264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 112448942 112449172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 112454449 112454556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 112455931 112457412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1920 nt):
ATGAATCTGGAAAAACTCAGCAAGCCTGAACTCCTGACACTATTTAGTATTCTTGAAGGAGAGCTTGAAG
CAAGGGACCTTGTTATAGAAGCCTTAAAGGCCCAACACAGAGATACTTTCATTGAAGAACGCTATGGAAA
ATATAACATCAGTGATCCTTTAATGGCTCTACAGAGAGATTTTGAAACACTGAAGGAGAAAAATGATGGC
GAAAAGCAGCCAGTCTGCACAAATCCACTCTCTATTCTTAAGGTTGTGATGAAGCAGTGCAAGAACATGC
AGGAGCGCATGCTGTCCCAGCTGGCTGCTGCTGAGAGCAGGCACCGAAAGGTGATCCTAGACCTTGAGGA
AGAAAGGCAGCGGCATGCACAGGATACGGCTGAAGGAGATGATGTCACCTACATGCTAGAGAAGGAAAGA
GAGAGGCTGACTCAACAGTTGGAATTTGAAAAATCCCAAGTGAAAAAGTTTGAAAAAGAACAGAAGAAGC
TCTCTAGTCAGCTGGAAGAGGAGCGCTCCCGCCACAAGCAGCTCTCATCCATGCTAGTGCTTGAGTGCAA
GAAAGCCACCAACAAGGCAGCCGAGGAAGGACAGAAGGCAGGAGAGCTGAGCCTGAAATTGGAGAAGGAG
AAGAGCCGGGTGAGTAAACTGGAAGAAGAGTTGGCAGCTGAGAGAAAGAGAGGCTTGCAGACTGAGGCCC
AGGTAGAGAAGCAGTTATCAGAGTTTGACATCGAAAGGGAACAACTGAGAGCAAAACTGAACCGAGAAGA
GAACCGGACCAAAACCCTGAAAGAAGAAATGGAAAGTTTAAAGAAGATAGTGAAGGACCTAGAGGCTTCC
CACCAGCACAGTAGCCCTAATGAGCAATTGAAGAAACCAGTAACCGTGTCCAAAGGCACAGCAACTGAGC
CTCTCATGCTAATGTCTGTGTTTTGCCAAACAGAGAGTTTTCCAGCAGAAAGAACCCATGGGAGCAACAT
AGCCAAGATGACAAACACTGGGCTGCCTGGTCCTGCCACTCCTGCTTACTCATATGCAAAAACCAATGGC
CATTGTGACCCAGAGATACAAACTACCAGGGAGCTGACTGCAGGCAACAATGTAGAAAACCAGGTGCCTC
CACGGGAAAAATCTGTGGCATTGGCCCAAGAGAAACCAGTGGAGAATGGTGGGTGTCCTGTGGGGATTGA
GACTCCAGTCCCAATGCCCAGTCCCCTCTCTTCCAGTGGGAGCTCACTGTCTCCCAGCAGCACTGCCTCC
TCCTCTCTAACATCCTCTCCTTGCTCTTCGCCGGTACTCACTAAGCGTTTATTGGGGTCATCAGCTAGCA
GCCCTGGCTACCAGTCATCGTACCAAGTAGGGATCAACCAACGGTTCCATGCAGCTCGCCACAAATTTCA
GTCCCAAGCAGATCAGGACCAACAAGCCAGTGGCCTACAGAGCCCTCCATCCAGGGATTTATCCCCCACC
CTCATAGACAACTCTGCCGCCAAGCAGCTGGCCCGAAACACAGTCACTCAGGTGCTCTCCAGATTCACTA
GCCAACAAGGGCCAATCAAGCCAGTCTCTCCCAACAGCTCTCCCTTTGGCACAGACTATCGAAATCTAGC
CAACACTGCCAATCCAAGAGGTGACACAAGCCATTCACCTACTCCAGGGAAAGTGTCCAGTCCCCTGAGC
CCCCTGTCTCCAGGAATCAAGTCCCCAACCATCCCCAGAGCTGAGAGAGGAAACCCTCCACCCATCCCAC
CCAAGAAACCTGGCCTCACCCCTTCTCCATCTGCTACCACTCCATTGACCAAAACTCATTCCCAGGCAGC
CTCTTTGACCACTGCAGAAGACCTTGCCAGCAGCTGCTCTTCCAATACTGTTGTAGCAAATGGTAAGGAT
GTTGAGTTACTTTTGCCTACCAGCAGCTAG

Translation (639 aa):
MNLEKLSKPELLTLFSILEGELEARDLVIEALKAQHRDTFIEERYGKYNISDPLMALQRDFETLKEKNDG
EKQPVCTNPLSILKVVMKQCKNMQERMLSQLAAAESRHRKVILDLEEERQRHAQDTAEGDDVTYMLEKER
ERLTQQLEFEKSQVKKFEKEQKKLSSQLEEERSRHKQLSSMLVLECKKATNKAAEEGQKAGELSLKLEKE
KSRVSKLEEELAAERKRGLQTEAQVEKQLSEFDIEREQLRAKLNREENRTKTLKEEMESLKKIVKDLEAS
HQHSSPNEQLKKPVTVSKGTATEPLMLMSVFCQTESFPAERTHGSNIAKMTNTGLPGPATPAYSYAKTNG
HCDPEIQTTRELTAGNNVENQVPPREKSVALAQEKPVENGGCPVGIETPVPMPSPLSSSGSSLSPSSTAS
SSLTSSPCSSPVLTKRLLGSSASSPGYQSSYQVGINQRFHAARHKFQSQADQDQQASGLQSPPSRDLSPT
LIDNSAAKQLARNTVTQVLSRFTSQQGPIKPVSPNSSPFGTDYRNLANTANPRGDTSHSPTPGKVSSPLS
PLSPGIKSPTIPRAERGNPPPIPPKKPGLTPSPSATTPLTKTHSQAASLTTAEDLASSCSSNTVVANGKD
VELLLPTSS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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