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Report for CCDS84179.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
84179.1 Public Mus musculus 15 Apobec3 23 108 98 CCDS HistoryNCBI Gene:80287Re-query CCDS DB by CCDS ID:84179.1Re-query CCDS DB by GeneID:80287See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 84179.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023054.13 ENSMUSP00000023054.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023054.13Link to Ensembl Protein Viewer:ENSMUSP00000023054.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000023054Re-query CCDS DB by Protein ID:ENSMUSP00000023054
Original member Current member NCBI NM_001347041.1 NP_001333970.1 Accepted alive Link to Nucleotide Sequence:NM_001347041.1Link to Protein Sequence:NP_001333970.1Re-query CCDS DB by Nucleotide ID:NM_001347041Re-query CCDS DB by Protein ID:NP_001333970Link to BLAST:NP_001333970.1

Chromosomal Locations for CCDS 84179.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 79897791 79897971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79898111 79898225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79905444 79905600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79906341 79906602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79906851 79906963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79907304 79907369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (894 nt):
ATGTCCTGGAGCCCCTGTTTCGAATGTGCAGAGCAGATAGTAAGGTTCCTGGCTACACACCACAACCTGA
GCCTGGACATCTTCAGCTCCCGCCTCTACAACGTACAGGACCCAGAAACCCAGCAGAATCTTTGCAGGCT
GGTTCAGGAAGGAGCCCAGGTGGCTGCCATGGACCTATACGAATTTAAAAAGTGTTGGAAGAAGTTTGTG
GACAATGGTGGCAGGCGATTCAGGCCTTGGAAAAGACTGCTTACAAATTTTAGATACCAGGATTCTAAGC
TTCAGGAGATTCTGAGGCGAATGGACCCGCTAAGTGAAGAGGAATTTTACTCGCAGTTTTACAACCAACG
AGTCAAGCATCTCTGCTACTACCACCGCATGAAGCCCTATCTATGCTACCAGCTGGAGCAGTTCAATGGC
CAAGCGCCACTCAAAGGCTGCCTGCTAAGCGAGAAAGGCAAACAGCATGCAGAAATCCTCTTCCTTGATA
AGATTCGGTCCATGGAGCTGAGCCAAGTGACAATCACCTGCTACCTCACCTGGAGCCCCTGCCCAAACTG
TGCCTGGCAACTGGCGGCATTCAAAAGGGATCGTCCAGATCTAATTCTGCATATCTACACCTCCCGCCTG
TATTTCCACTGGAAGAGGCCCTTCCAGAAGGGGCTGTGTTCTCTGTGGCAATCAGGGATCCTGGTGGACG
TCATGGACCTCCCACAGTTTACTGACTGCTGGACAAACTTTGTGAACCCGAAAAGGCCGTTTTGGCCATG
GAAAGGATTGGAGATAATCAGCAGGCGCACACAAAGGCGGCTCCGCAGGATCAAGGAGTCCTGGGGTCTG
CAAGATTTGGTGAATGACTTTGGAAACCTACAGCTTGGACCCCCGATGTCTTGA

Translation (297 aa):
MSWSPCFECAEQIVRFLATHHNLSLDIFSSRLYNVQDPETQQNLCRLVQEGAQVAAMDLYEFKKCWKKFV
DNGGRRFRPWKRLLTNFRYQDSKLQEILRRMDPLSEEEFYSQFYNQRVKHLCYYHRMKPYLCYQLEQFNG
QAPLKGCLLSEKGKQHAEILFLDKIRSMELSQVTITCYLTWSPCPNCAWQLAAFKRDRPDLILHIYTSRL
YFHWKRPFQKGLCSLWQSGILVDVMDLPQFTDCWTNFVNPKRPFWPWKGLEIISRRTQRRLRRIKESWGL
QDLVNDFGNLQLGPPMS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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