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Report for CCDS84116.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
84116.1 Public Mus musculus 14 Prxl2a 23 108 98 CCDS HistoryNCBI Gene:70564Re-query CCDS DB by CCDS ID:84116.1Re-query CCDS DB by GeneID:70564See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 84116.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000118466.7 ENSMUSP00000112377.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000118466.7Link to Ensembl Protein Viewer:ENSMUSP00000112377.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000118466Re-query CCDS DB by Protein ID:ENSMUSP00000112377
Original member Current member NCBI NM_001316734.1 NP_001303663.1 Accepted alive Link to Nucleotide Sequence:NM_001316734.1Link to Protein Sequence:NP_001303663.1Re-query CCDS DB by Nucleotide ID:NM_001316734Re-query CCDS DB by Protein ID:NP_001303663Link to BLAST:NP_001303663.1
Original member Current member NCBI NM_001316735.1 NP_001303664.1 Accepted alive Link to Nucleotide Sequence:NM_001316735.1Link to Protein Sequence:NP_001303664.1Re-query CCDS DB by Nucleotide ID:NM_001316735Re-query CCDS DB by Protein ID:NP_001303664Link to BLAST:NP_001303664.1
Original member Current member NCBI NM_001316736.1 NP_001303665.1 Accepted alive Link to Nucleotide Sequence:NM_001316736.1Link to Protein Sequence:NP_001303665.1Re-query CCDS DB by Nucleotide ID:NM_001316736Re-query CCDS DB by Protein ID:NP_001303665Link to BLAST:NP_001303665.1

Chromosomal Locations for CCDS 84116.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 40994524 40994637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 40997713 40997877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 40998844 40998984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 41002436 41002527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 41004041 41004218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (690 nt):
ATGTCTTTTCTCCAGGACCCAAGTTTCTTCTCCATGGGTATGTGGTCCATCGGTGTGGGAGCTGTGGGGG
CCGCTGCTGTGGCACTGCTCCTGGCCAACACAGACATGTTTCTGTCCAAGCCCCGAAAAGCAGCACTGGA
ATATTTGGAAGACATAGACCTGAAAACACTGGAGAAAGAACCAAGGACATTCAAAGCAAAGGAGCTGTGG
GAGAAGAACGGGGCTGTGATTATGGCTGTACGCAGGCCAGGCTGCTTTCTCTGCCGAGCGGAAGCAGCAG
ACCTGATGTCCTTGAAGCCCAAGTTGGATGAGCTAGGTGTCCCTCTCTATGCGGTGGTGAAGGAGCAGGT
GAAGAGAGAAGTGGAAGATTTCCAACCTTACTTCAAAGGGGAAATCTTCCTGGATGAAAAGAAAAAATTC
TATGGTCCAGAGAGGCGGAAGATGATGTTCATGGGCCTCATCCGATTGGGGGTGTGGTATAACTCCTTTC
GAGCCTGGAATGGAGGCTTCTCTGGAAACCTAGAAGGCGAAGGCTTCATCCTTGGAGGAGTTTTTGTGAT
AGGATCTGGAAAACAGGGCATCCTTCTTGAGCACCGAGAAAAAGAATTTGGAGACAGAGTGAACCCACTC
TCTGTTCTGGAGGCTGTAAAGAAAATCAAGCTACAGACTCCAGCGTCCGGGAGAAGCTGA

Translation (229 aa):
MSFLQDPSFFSMGMWSIGVGAVGAAAVALLLANTDMFLSKPRKAALEYLEDIDLKTLEKEPRTFKAKELW
EKNGAVIMAVRRPGCFLCRAEAADLMSLKPKLDELGVPLYAVVKEQVKREVEDFQPYFKGEIFLDEKKKF
YGPERRKMMFMGLIRLGVWYNSFRAWNGGFSGNLEGEGFILGGVFVIGSGKQGILLEHREKEFGDRVNPL
SVLEAVKKIKLQTPASGRS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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