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Report for CCDS83995.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
83995.1 Public Mus musculus 12 Calm1 23 108 98 CCDS HistoryNCBI Gene:12313Re-query CCDS DB by CCDS ID:83995.1Re-query CCDS DB by GeneID:12313See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 83995.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000238462.1 ENSMUSP00000158788.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000238462.1Link to Ensembl Protein Viewer:ENSMUSP00000158788.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000238462Re-query CCDS DB by Protein ID:ENSMUSP00000158788
Original member Current member NCBI NM_001313934.1 NP_001300863.1 Accepted alive Link to Nucleotide Sequence:NM_001313934.1Link to Protein Sequence:NP_001300863.1Re-query CCDS DB by Nucleotide ID:NM_001313934Re-query CCDS DB by Protein ID:NP_001300863Link to BLAST:NP_001300863.1

Chromosomal Locations for CCDS 83995.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 100200159 100200305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 100202393 100202423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 100203575 100203718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 100205613 100205719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 100206098 100206233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 100206400 100206428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (594 nt):
ATGGGTCGCGGCGAGCCGGGAGACGTACAGGGCTTGGACCGCGGCCTCGGGGTGTCCTCAGCCACCTTCA
GACCCCCTGACCAGCCCAGTCGGGAGTCCCCCCTCGCTTGCGGTCCCCTCCTTCCTCCCGGGGGGCGCGG
CGCGGGCGCTGATCAGCTGACTGAAGAGCAGATTGCTGAATTCAAGGAAGCTTTCTCCCTATTCGATAAA
GATGGTGACGGCACCATCACAACCAAGGAACTGGGGACCGTCATGCGGTCACTGGGTCAGAACCCAACAG
AAGCCGAGCTGCAGGATATGATCAACGAAGTGGATGCTGATGGCAATGGCACCATTGACTTCCCAGAGTT
CTTGACTATGATGGCTAGAAAAATGAAAGACACAGATAGCGAAGAAGAGATCCGCGAGGCCTTCCGAGTG
TTTGACAAGGATGGGAATGGTTACATCAGTGCGGCAGAACTGCGCCACGTCATGACAAACTTAGGAGAAA
AGCTAACAGATGAAGAAGTAGATGAAATGATCAGAGAAGCAGATATTGATGGCGACGGACAAGTCAACTA
TGAAGAATTCGTACAGATGATGACTGCAAAATGA

Translation (197 aa):
MGRGEPGDVQGLDRGLGVSSATFRPPDQPSRESPLACGPLLPPGGRGAGADQLTEEQIAEFKEAFSLFDK
DGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRV
FDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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