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Report for CCDS83925.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
83925.1 Public Mus musculus 11 Cd300lf 23 108 98 CCDS HistoryNCBI Gene:246746Re-query CCDS DB by CCDS ID:83925.1Re-query CCDS DB by GeneID:246746See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 83925.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000106562.2 ENSMUSP00000102172.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106562.2Link to Ensembl Protein Viewer:ENSMUSP00000102172.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000106562Re-query CCDS DB by Protein ID:ENSMUSP00000102172
Original member Current member NCBI NM_001347648.1 NP_001334577.1 Accepted alive Link to Nucleotide Sequence:NM_001347648.1Link to Protein Sequence:NP_001334577.1Re-query CCDS DB by Nucleotide ID:NM_001347648Re-query CCDS DB by Protein ID:NP_001334577Link to BLAST:NP_001334577.1

Chromosomal Locations for CCDS 83925.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 115116974 115117150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115117543 115117686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115118070 115118092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115120264 115120418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115126104 115126452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115133839 115133881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (891 nt):
ATGCATTTGTCATTGCTGGTCCCCTTTCTCTTCTGGATCACAGGCTGCTGCACGGCTGAGGATCCAGTCA
CAGGTCCAGAGGAGGTGAGCGGTCAGGAGCAGGGCTCCTTGACAGTGCAGTGCCGATATACCTCAGGCTG
GAAGGATTACAAGAAGTACTGGTGCCAAGGAGTTCCTCAGAGATCATGTAAGACTCTTGTTGAAACCGAT
GCATCAGAGCAGCTGGTGAAGAAGAACCGTGTGTCCATCAGGGACAACCAGAGAGACTTCATCTTCACAG
TGACCATGGAGGATCTGAGGATGAGCGATGCTGGCATTTACTGGTGTGGAATTACGAAAGGTGGACTTGA
TCCCATGTTTAAAGTTACTGTGAACATTGGCCCAGGTAAGAGGCATGGCGGTGGTGACAGTGGCGGTGGT
GAAGATGGCGTCGGTGATGGGTTTCTGGATCTCAGTGTGCTCCTCCCAGTCATCTCTGCAGTCCTGTTGC
TTCTCCTGTTGGTGGCCTCGCTCTTTGCTTGGAGGATGGTGAGGAGACAGAAGAAAGCTGCTGGGCCACC
ATCAGAGCAGGCACAGTCTCTGGAGGGTGATCTCTGTTATGCAGACCTGTCCCTGAAGCAGCCCAGAACC
TCCCCTGGCTCCTCTTGGAAAAAGGGCTCCTCCATGTCCTCCTCTGGCAAGGACCACCAAGAGGAAGTGG
AATATGTCACCATGGCTCCCTTTCCCAGGGAGGAGGTTTCATATGCCGCTCTGACTTTGGCCGGCTTGGG
TCAGGAGCCTACTTATGGCAATACTGGCTGCCCCATCACCCACGTTCCCAGGACAGGCCTTGAAGAGGAG
ACCACAGAGTACAGCAGCATCAGGAGGCCCTTGCCTGCAGCCATGCCTTAA

Translation (296 aa):
MHLSLLVPFLFWITGCCTAEDPVTGPEEVSGQEQGSLTVQCRYTSGWKDYKKYWCQGVPQRSCKTLVETD
ASEQLVKKNRVSIRDNQRDFIFTVTMEDLRMSDAGIYWCGITKGGLDPMFKVTVNIGPGKRHGGGDSGGG
EDGVGDGFLDLSVLLPVISAVLLLLLLVASLFAWRMVRRQKKAAGPPSEQAQSLEGDLCYADLSLKQPRT
SPGSSWKKGSSMSSSGKDHQEEVEYVTMAPFPREEVSYAALTLAGLGQEPTYGNTGCPITHVPRTGLEEE
TTEYSSIRRPLPAAMP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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