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Report for CCDS83889.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
83889.1 Public Mus musculus 11 Ppp1r1b 23 108 98 CCDS HistoryNCBI Gene:19049Re-query CCDS DB by CCDS ID:83889.1Re-query CCDS DB by GeneID:19049See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 83889.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000150762.7 ENSMUSP00000121147.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000150762.7Link to Ensembl Protein Viewer:ENSMUSP00000121147.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000150762Re-query CCDS DB by Protein ID:ENSMUSP00000121147
Original member Current member EBI ENSMUST00000137634.1 ENSMUSP00000123528.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000137634.1Link to Ensembl Protein Viewer:ENSMUSP00000123528.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000137634Re-query CCDS DB by Protein ID:ENSMUSP00000123528
Original member Current member NCBI NM_001313970.1 NP_001300899.1 Accepted alive Link to Nucleotide Sequence:NM_001313970.1Link to Protein Sequence:NP_001300899.1Re-query CCDS DB by Nucleotide ID:NM_001313970Re-query CCDS DB by Protein ID:NP_001300899Link to BLAST:NP_001300899.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001300899.1 158 Q60829-2 158 100% 0 0

Chromosomal Locations for CCDS 83889.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 98350596 98350629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98350885 98350907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98351266 98351341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98355327 98355509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98356825 98356947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98357033 98357070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (477 nt):
ATGCTTTTCCGGGTCTCAGAGCACTCCTCACCAGAGGAGGAGGCCTCTCCACATCAGAGAACCTCTGGAG
AGGGGCACCACCCAAAGTCGAAGAGACCCAACCCCTGTGCCTATACGCCCCCATCACTGAAAGCTGTGCA
GCACCTGCAGACCATTAGCAACTTGAGTGAGAACCAGGCCTCGGAGGAAGAGGATGAGTTAGGGGAGCTT
CGGGAGCTTGGGTACCCACAGGAGGATGATGAGGAGGATGAGGATGAAGAGGAGGACGAAGAAGAAGACA
GCCAGGCGGAGGTCCTGAAAGGCAGCAGGGGCACTGTGGGGCAGAAGCCTACTTGTGGCCGGGGTCTGGA
GGGGCCCTGGGAGCGCCCACCTCCTCTGGATGAGCCCCAGAGAGATGGAAACTCTGAGGACCAAGTGGAA
GGCAGAGCAACACTAAGTGAGCCTGGAGAGGAACCTCAGCATCCCAGCCCCCCCTGA

Translation (158 aa):
MLFRVSEHSSPEEEASPHQRTSGEGHHPKSKRPNPCAYTPPSLKAVQHLQTISNLSENQASEEEDELGEL
RELGYPQEDDEEDEDEEEDEEEDSQAEVLKGSRGTVGQKPTCGRGLEGPWERPPPLDEPQRDGNSEDQVE
GRATLSEPGEEPQHPSPP


Links Key
 Links to:   History report
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  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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  VEGA Genome Browser

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