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Report for CCDS8378.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8378.1 Public Homo sapiens 11 APOA1 24 110 108 CCDS HistoryNCBI Gene:335Re-query CCDS DB by CCDS ID:8378.1Re-query CCDS DB by GeneID:335See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8378.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000236850.5 ENSP00000236850.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000236850.5Link to Ensembl Protein Viewer:ENSP00000236850.3Re-query CCDS DB by Nucleotide ID:ENST00000236850Re-query CCDS DB by Protein ID:ENSP00000236850
Original member Current member EBI ENST00000359492.6 ENSP00000352471.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000359492.6Link to Ensembl Protein Viewer:ENSP00000352471.2Re-query CCDS DB by Nucleotide ID:ENST00000359492Re-query CCDS DB by Protein ID:ENSP00000352471
Original member Current member EBI ENST00000375320.5 ENSP00000364469.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000375320.5Link to Ensembl Protein Viewer:ENSP00000364469.1Re-query CCDS DB by Nucleotide ID:ENST00000375320Re-query CCDS DB by Protein ID:ENSP00000364469
Original member Current member EBI ENST00000375323.5 ENSP00000364472.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000375323.5Link to Ensembl Protein Viewer:ENSP00000364472.1Re-query CCDS DB by Nucleotide ID:ENST00000375323Re-query CCDS DB by Protein ID:ENSP00000364472
Original member Current member NCBI NM_000039.3 NP_000030.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_000039.3Link to Protein Sequence:NP_000030.1Re-query CCDS DB by Nucleotide ID:NM_000039Re-query CCDS DB by Protein ID:NP_000030Link to BLAST:NP_000030.1
Original member Current member NCBI NM_001318017.2 NP_001304946.1 Accepted alive Link to Nucleotide Sequence:NM_001318017.2Link to Protein Sequence:NP_001304946.1Re-query CCDS DB by Nucleotide ID:NM_001318017Re-query CCDS DB by Protein ID:NP_001304946Link to BLAST:NP_001304946.1
Original member Current member NCBI NM_001318018.2 NP_001304947.1 Accepted alive Link to Nucleotide Sequence:NM_001318018.2Link to Protein Sequence:NP_001304947.1Re-query CCDS DB by Nucleotide ID:NM_001318018Re-query CCDS DB by Protein ID:NP_001304947Link to BLAST:NP_001304947.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_000030.1 267 P02647 267 100% 0 0
NP_001304946.1 267 P02647 267 100% 0 0
NP_001304947.1 267 P02647 267 100% 0 0

Chromosomal Locations for CCDS 8378.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 116835808 116836411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116837001 116837157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116837345 116837387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (804 nt):
ATGAAAGCTGCGGTGCTGACCTTGGCCGTGCTCTTCCTGACGGGGAGCCAGGCTCGGCATTTCTGGCAGC
AAGATGAACCCCCCCAGAGCCCCTGGGATCGAGTGAAGGACCTGGCCACTGTGTACGTGGATGTGCTCAA
AGACAGCGGCAGAGACTATGTGTCCCAGTTTGAAGGCTCCGCCTTGGGAAAACAGCTAAACCTAAAGCTC
CTTGACAACTGGGACAGCGTGACCTCCACCTTCAGCAAGCTGCGCGAACAGCTCGGCCCTGTGACCCAGG
AGTTCTGGGATAACCTGGAAAAGGAGACAGAGGGCCTGAGGCAGGAGATGAGCAAGGATCTGGAGGAGGT
GAAGGCCAAGGTGCAGCCCTACCTGGACGACTTCCAGAAGAAGTGGCAGGAGGAGATGGAGCTCTACCGC
CAGAAGGTGGAGCCGCTGCGCGCAGAGCTCCAAGAGGGCGCGCGCCAGAAGCTGCACGAGCTGCAAGAGA
AGCTGAGCCCACTGGGCGAGGAGATGCGCGACCGCGCGCGCGCCCATGTGGACGCGCTGCGCACGCATCT
GGCCCCCTACAGCGACGAGCTGCGCCAGCGCTTGGCCGCGCGCCTTGAGGCTCTCAAGGAGAACGGCGGC
GCCAGACTGGCCGAGTACCACGCCAAGGCCACCGAGCATCTGAGCACGCTCAGCGAGAAGGCCAAGCCCG
CGCTCGAGGACCTCCGCCAAGGCCTGCTGCCCGTGCTGGAGAGCTTCAAGGTCAGCTTCCTGAGCGCTCT
CGAGGAGTACACTAAGAAGCTCAACACCCAGTGA

Translation (267 aa):
MKAAVLTLAVLFLTGSQARHFWQQDEPPQSPWDRVKDLATVYVDVLKDSGRDYVSQFEGSALGKQLNLKL
LDNWDSVTSTFSKLREQLGPVTQEFWDNLEKETEGLRQEMSKDLEEVKAKVQPYLDDFQKKWQEEMELYR
QKVEPLRAELQEGARQKLHELQEKLSPLGEEMRDRARAHVDALRTHLAPYSDELRQRLAARLEALKENGG
ARLAEYHAKATEHLSTLSEKAKPALEDLRQGLLPVLESFKVSFLSALEEYTKKLNTQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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