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Report for CCDS83494.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
83494.1 Public Homo sapiens X ZIC3 24 110 108 CCDS HistoryNCBI Gene:7547Re-query CCDS DB by CCDS ID:83494.1Re-query CCDS DB by GeneID:7547See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 83494.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000370606.3 ENSP00000359638.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000370606.3Link to Ensembl Protein Viewer:ENSP00000359638.3Re-query CCDS DB by Nucleotide ID:ENST00000370606Re-query CCDS DB by Protein ID:ENSP00000359638
Original member Current member NCBI NM_001330661.1 NP_001317590.1 Accepted alive Link to Nucleotide Sequence:NM_001330661.1Link to Protein Sequence:NP_001317590.1Re-query CCDS DB by Nucleotide ID:NM_001330661Re-query CCDS DB by Protein ID:NP_001317590Link to BLAST:NP_001317590.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001317590.1 457 O60481-2 457 100% 0 0

Chromosomal Locations for CCDS 83494.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 137566692 137567751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 137568902 137569065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 137577122 137577271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1374 nt):
ATGACGATGCTCCTGGACGGAGGCCCGCAGTTCCCTGGGCTGGGAGTGGGCAGCTTCGGCGCGCCGCGCC
ACCACGAGATGCCCAACCGTGAGCCGGCAGGCATGGGGCTGAATCCCTTCGGGGACTCAACCCACGCCGC
CGCCGCCGCCGCCGCCGCCGCTGCCTTCAAGCTGAGCCCTGCCGCGGCGCACGATCTATCTTCAGGCCAG
AGCTCGGCTTTCACGCCGCAGGGTTCGGGCTACGCCAACGCCCTGGGCCACCATCACCACCACCATCACC
ATCATCACCACACCAGCCAGGTGCCCAGCTACGGTGGCGCTGCCTCTGCCGCCTTCAACTCAACGCGCGA
GTTTCTGTTCCGCCAGCGCAGCTCCGGGCTCAGTGAGGCGGCCTCGGGTGGCGGGCAGCACGGGCTCTTC
GCCGGCTCGGCGAGCAGCCTGCATGCTCCAGCTGGCATCCCCGAGCCCCCTAGCTACTTGCTGTTTCCCG
GGCTGCATGAGCAGGGCGCTGGGCACCCGTCGCCCACAGGGCACGTGGACAACAACCAGGTCCACCTGGG
GCTGCGTGGGGAGCTGTTCGGCCGTGCTGACCCATACCGCCCAGTGGCCAGCCCGCGCACGGACCCCTAC
GCGGCCGGCGCTCAGTTTCCTAACTACAGCCCCATGAACATGAACATGGGAGTGAACGTGGCGGCCCACC
ACGGGCCCGGCGCCTTCTTCCGTTATATGCGGCAGCCTATCAAGCAGGAGCTGTCGTGCAAGTGGATCGA
CGAGGCTCAGCTGAGCCGGCCCAAGAAGAGCTGCGACCGGACCTTCAGCACCATGCATGAGCTGGTGACA
CATGTCACCATGGAGCATGTGGGGGGCCCGGAGCAGAACAACCACGTCTGCTACTGGGAGGAGTGCCCCC
GGGAGGGCAAGTCTTTCAAGGCGAAGTACAAACTGGTCAACCACATCCGAGTGCACACGGGCGAGAAGCC
CTTCCCATGCCCCTTCCCGGGCTGCGGGAAGATCTTTGCCCGTTCTGAGAACCTCAAGATCCACAAGAGG
ACCCACACAGGTGAGAAACCTTTCAAATGTGAATTTGAAGGCTGTGACAGACGCTTTGCCAACAGCAGCG
ACCGTAAGAAGCACATGCATGTGCATACCTCGGACAAGCCCTATATCTGCAAAGTGTGCGACAAGTCCTA
CACGCACCCGAGCTCCCTGCGCAAACACATGAAGTGTTGTCCTGCTTGGTATCCGGGACAGTCTCTAATT
CCTGACGAAGAACTTGATACTGACGTTGGTATGCAGCAGCCAGCCCTCCATAACACTACCTATCCTAAAT
GCAGGGTTAATGCCGAACCTACTGTGCAAGAAATGATTTACTGA

Translation (457 aa):
MTMLLDGGPQFPGLGVGSFGAPRHHEMPNREPAGMGLNPFGDSTHAAAAAAAAAAFKLSPAAAHDLSSGQ
SSAFTPQGSGYANALGHHHHHHHHHHHTSQVPSYGGAASAAFNSTREFLFRQRSSGLSEAASGGGQHGLF
AGSASSLHAPAGIPEPPSYLLFPGLHEQGAGHPSPTGHVDNNQVHLGLRGELFGRADPYRPVASPRTDPY
AAGAQFPNYSPMNMNMGVNVAAHHGPGAFFRYMRQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVT
HVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKR
THTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKPYICKVCDKSYTHPSSLRKHMKCCPAWYPGQSLI
PDEELDTDVGMQQPALHNTTYPKCRVNAEPTVQEMIY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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