CCDS Report for Consensus CDS

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Report for CCDS8342.1 (current version)

CCDS	Status	Species	Chrom.	Gene	CCDS Release	NCBI Annotation Release	Ensembl Annotation Release	Links
8342.1	Public	Homo sapiens	11	DDX10	24	110	108

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8342.1

Original	Current	Source	Nucleotide ID	Protein ID	MANE	Status in CCDS	Seq. Status	Links
		EBI	ENST00000322536.8	ENSP00000314348.3	MANE Select	Accepted	alive
		NCBI	NM_004398.4	NP_004389.2	MANE Select	Accepted	alive

RefSeq	Length	Related UniProtKB/SwissProt	Length	Identity	Gaps	Mismatches
NP_004389.2	875	Q13206	875	100%	0	0

Chromosomal Locations for CCDS 8342.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)

Genome Browser links:

Chromosome	Start	Stop
11	108665154	108665339
11	108673467	108673527
11	108675596	108675726
11	108677085	108677243
11	108678315	108678435
11	108679371	108679560
11	108688936	108689062
11	108691876	108692038
11	108693516	108693600
11	108706739	108706837
11	108715879	108715966
11	108719797	108719885
11	108722997	108723462
11	108838446	108838565
11	108841315	108841476
11	108852153	108852209
11	108917873	108918018
11	108940246	108940423

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.

Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2628 nt):
ATGGGCAAAACGGCCAACTCTCCGGGTTCGGGAGCCCGACCCGACCCGGTGCGGAGCTTCAATCGCTGGA AGAAAAAACACAGCCATAGGCAGAACAAAAAGAAGCAGTTGAGGAAGCAACTGAAGAAACCCGAATGGCA GGTCGAGCGCGAGAGTATCAGCCGCCTCATGCAGAACTATGAAAAGATAAATGTAAATGAAATCACAAGA TTTTCAGATTTTCCCTTGTCCAAAAAAACATTGAAAGGTTTGCAAGAAGCTCAGTACCGTTTGGTGACTG AGATACAGAAGCAGACCATTGGATTGGCTTTGCAAGGTAAAGATGTACTTGGAGCGGCCAAAACTGGATC TGGCAAGACTCTGGCTTTTCTTGTTCCAGTGCTGGAAGCCTTATATCGTCTGCAATGGACTTCAACAGAT GGGCTGGGGGTTCTCATAATATCACCTACGAGAGAACTGGCCTATCAGACCTTTGAGGTTCTCCGAAAAG TAGGAAAGAATCATGACTTCTCAGCTGGTCTCATCATTGGTGGAAAGGATCTAAAACACGAAGCTGAGAG GATCAACAACATAAATATACTCGTGTGCACACCAGGTCGGCTTCTTCAACACATGGATGAAACAGTATCT TTTCATGCTACCGACCTCCAAATGTTAGTTCTTGATGAAGCAGATAGAATCTTGGATATGGGCTTTGCTG ATACCATGAATGCTGTTATTGAAAATCTCCCCAAGAAACGTCAGACTTTACTTTTCTCAGCAACACAAAC TAAATCTGTAAAGGACCTTGCACGCTTGAGTTTGAAAAACCCTGAGTATGTCTGGGTTCATGAAAAAGCA AAATATAGCACCCCTGCCACTTTGGAACAGAACTACATAGTCTGTGAGCTGCAGCAAAAAATAAGTGTGC TGTATTCCTTTTTGAGAAGCCATCTGAAGAAGAAGAGCATTGTATTTTTTTCCAGTTGCAAAGAGGTCCA GTATCTGTACCGAGTGTTTTGCCGGCTACGTCCTGGTGTTTCTATCCTTGCACTCCATGGTCGACAGCAG CAAATGAGAAGAATGGAAGTCTATAATGAGTTTGTCCGTAAGAGAGCTGCAGTACTCTTTGCTACTGATA TTGCAGCCAGGGGTCTGGATTTCCCGGCCGTGAATTGGGTTCTTCAGTTTGATTGTCCTGAGGATGCCAA CACATATATTCACAGAGCAGGTAGAACTGCCAGGTACAAAGAGGATGGTGAAGCTTTGCTAATTTTGCTA CCCTCAGAAAAAGCTATGGTGCAGCAGCTTCTTCAGAAGAAAGTACCTGTGAAGGAAATCAAAATCAATC CAGAAAAACTTATAGATGTCCAGAAAAAATTGGAATCTATTTTAGCTCAAGATCAAGATTTAAAAGAAAG AGCTCAAAGGTGTTTCGTCTCCTATGTACGATCTGTATATCTGATGAAGGATAAAGAAGTATTTGATGTG AGCAAGTTACCTATACCTGAATATGCCCTGTCTCTTGGTCTTGCTGTGGCACCACGCGTAAGATTTCTTC AGAAAATGCAGAAACAACCCACCAAAGAATTGGTAAGGAGCCAAGCCGATAAAGTAATTGAGCCAAGGGC TCCCTCCCTCACCAATGACGAAGTGGAAGAATTTAGAGCCTACTTCAATGAGAAAATGTCCATCCTTCAA AAAGGTGGAAAAAGACTCGAAGGGACAGAGCACAGACAGGATAATGATACTGGTAATGAAGAACAGGAAG AAGAAGAAGACGATGAAGAAGAAATGGAAGAGAAACTGGCAAAAGCAAAAGGATCTCAAGCCCCATCTCT TCCTAACACCAGTGAGGCACAGAAGATCAAGGAAGTTCCTACACAGTTCTTGGACAGAGATGAGGAGGAA GAAGATGCTGATTTCTTGAAGGTGAAGCGGCATAATGTGTTTGGATTGGACCTTAAAGACGAGAAAACAT TACAGAAGAAAGAACCTTCTAAATCCAGCATCAAGAAAAAAATGACCAAAGTTGCAGAAGCAAAAAAAGT AATGAAGAGAAATTTTAAAGTGAATAAGAAGATAACATTTACTGATGAAGGGGAGTTGGTTCAGCAGTGG CCACAAATGCAGAAATCTGCCATCAAGGATGCTGAGGAAGATGATGACACAGGTGGTATCAACTTACATA AAGCAAAGGAAAGACTTCAGGAAGAGGACAAATTTGACAAAGAAGAATATAGGAAAAAAATTAAGGCAAA GCATCGGGAGAAAAGACTGAAAGAAAGGGAAGCCAGAAGAGAAGCCAACAAGAGACAAGCAAAGGCCAAA GATGAAGAGGAAGCCTTTCTGGATTGGAGTGATGATGATGATGATGATGATGATGGATTTGATCCAAGCA CACTCCCAGATCCAGATAAATACAGAAGCTCTGAAGATTCAGATAGTGAAGATATGGAAAATAAAATAAG TGATACCAAGAAGAAGCAGGGGATGAAGAAGAGGAGCAACAGTGAAGTGGAAGACGTGGGACCAACAAGT CATAACAGAAAGAAGGCCAGGTGGGACACTTTAGAGCCTTTGGATACCGGCCTGTCTTTAGCAGAGGATG AAGAGCTGGTGTTACATCTGCTAAGAAGTCAAAGCTAA
Translation (875 aa):
MGKTANSPGSGARPDPVRSFNRWKKKHSHRQNKKKQLRKQLKKPEWQVERESISRLMQNYEKINVNEITR FSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTD GLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERINNINILVCTPGRLLQHMDETVS FHATDLQMLVLDEADRILDMGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLSLKNPEYVWVHEKA KYSTPATLEQNYIVCELQQKISVLYSFLRSHLKKKSIVFFSSCKEVQYLYRVFCRLRPGVSILALHGRQQ QMRRMEVYNEFVRKRAAVLFATDIAARGLDFPAVNWVLQFDCPEDANTYIHRAGRTARYKEDGEALLILL PSEKAMVQQLLQKKVPVKEIKINPEKLIDVQKKLESILAQDQDLKERAQRCFVSYVRSVYLMKDKEVFDV SKLPIPEYALSLGLAVAPRVRFLQKMQKQPTKELVRSQADKVIEPRAPSLTNDEVEEFRAYFNEKMSILQ KGGKRLEGTEHRQDNDTGNEEQEEEEDDEEEMEEKLAKAKGSQAPSLPNTSEAQKIKEVPTQFLDRDEEE EDADFLKVKRHNVFGLDLKDEKTLQKKEPSKSSIKKKMTKVAEAKKVMKRNFKVNKKITFTDEGELVQQW PQMQKSAIKDAEEDDDTGGINLHKAKERLQEEDKFDKEEYRKKIKAKHREKRLKEREARREANKRQAKAK DEEEAFLDWSDDDDDDDDGFDPSTLPDPDKYRSSEDSDSEDMENKISDTKKKQGMKKRSNSEVEDVGPTS HNRKKARWDTLEPLDTGLSLAEDEELVLHLLRSQS

	Links Key
	Links to:	History report BLAST report Entrez Gene Nucleotide report Protein report
	Re-query CCDS DB by:	CCDS ID Gene ID Nucleotide ID Protein ID
	Genome Browser Links:	Ensembl Genome Browser NCBI Sequence Viewer UCSC Genome Browser VEGA Genome Browser

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