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Report for CCDS83359.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
83359.1 Public Homo sapiens 9 SPATA31F3 24 110 108 CCDS HistoryNCBI Gene:100129969Re-query CCDS DB by CCDS ID:83359.1Re-query CCDS DB by GeneID:100129969See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 83359.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000340783.11 ENSP00000489571.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000340783.11Link to Ensembl Protein Viewer:ENSP00000489571.1Re-query CCDS DB by Nucleotide ID:ENST00000340783Re-query CCDS DB by Protein ID:ENSP00000489571
Original member Current member NCBI NM_001309427.2 NP_001296356.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001309427.2Link to Protein Sequence:NP_001296356.1Re-query CCDS DB by Nucleotide ID:NM_001309427Re-query CCDS DB by Protein ID:NP_001296356Link to BLAST:NP_001296356.1

Chromosomal Locations for CCDS 83359.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 34889364 34889632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 34893046 34893152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 34894441 34894501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 34895039 34895084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 34895579 34895722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (627 nt):
ATGTTGAGCCCTACCTTTGTTTTGTGGGATGTTGGATATCCCTTATACACCTATGGATCCATCTGCATTA
TTGCATTAATTATTTGGCAAGTGAAAAAGAGCTGCCAAAAATTAAGCTTGGTACCTAACAGGAGCTGTTG
CCGGTGTCACCGAAGAGTCCAACAAAAGTCTGGAGATAGAACATCAAGAGCTAGGAGAACTTCACAGGAA
GAAGCCGAGAAGTTGTGGAAGCTGCTGTTTCTCATGAAAAGCCAGGGCTGGCTTCCTCAGGAAGGAAGTG
TGCGGCGAATCCTGTGTGCAGACCCCTGCTGCCAAATCTGCAATGTTATGGCTCTGGAGATTAAGCAATT
GCTGGCAGCTCCAGAAGTTGGCTTGGATAACAAGATGAAGCTGTTTCTGCACTGGATTAACCCTGAAATG
AAAGATCGAAGGCATGAGGAATCCATTCTCCTTTCTAAGGCTGAGACAGTGACCCAAGACAGGACAAAAA
ACATTGAGAAGAGTCCAACTGTCACCAAAGATCATGTGTGGGGAGCTACAACACAGAAGACAACAGAGGA
CCCTGAGGCTCAGCCTCCTTCTACTGAGGAGGAAGGCCTGATCTTCTGTGATGCCCCCAGTGCCTAA

Translation (208 aa):
MLSPTFVLWDVGYPLYTYGSICIIALIIWQVKKSCQKLSLVPNRSCCRCHRRVQQKSGDRTSRARRTSQE
EAEKLWKLLFLMKSQGWLPQEGSVRRILCADPCCQICNVMALEIKQLLAAPEVGLDNKMKLFLHWINPEM
KDRRHEESILLSKAETVTQDRTKNIEKSPTVTKDHVWGATTQKTTEDPEAQPPSTEEEGLIFCDAPSA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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