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Report for CCDS83358.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
83358.1 Public Homo sapiens 9 SPATA31F3 24 110 108 CCDS HistoryNCBI Gene:100129969Re-query CCDS DB by CCDS ID:83358.1Re-query CCDS DB by GeneID:100129969See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 83358.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000603640.6 ENSP00000489585.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000603640.6Link to Ensembl Protein Viewer:ENSP00000489585.1Re-query CCDS DB by Nucleotide ID:ENST00000603640Re-query CCDS DB by Protein ID:ENSP00000489585
Original member Current member NCBI NM_001309426.2 NP_001296355.1 Accepted alive Link to Nucleotide Sequence:NM_001309426.2Link to Protein Sequence:NP_001296355.1Re-query CCDS DB by Nucleotide ID:NM_001309426Re-query CCDS DB by Protein ID:NP_001296355Link to BLAST:NP_001296355.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001296355.1 338 A6NFA0 338 100% 0 0

Chromosomal Locations for CCDS 83358.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 34889364 34889635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 34892659 34893152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 34894441 34894501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 34895039 34895084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 34895579 34895722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1017 nt):
ATGTTGAGCCCTACCTTTGTTTTGTGGGATGTTGGATATCCCTTATACACCTATGGATCCATCTGCATTA
TTGCATTAATTATTTGGCAAGTGAAAAAGAGCTGCCAAAAATTAAGCTTGGTACCTAACAGGAGCTGTTG
CCGGTGTCACCGAAGAGTCCAACAAAAGTCTGGAGATAGAACATCAAGAGCTAGGAGAACTTCACAGGAA
GAAGCCGAGAAGTTGTGGAAGCTGCTGTTTCTCATGAAAAGCCAGGGCTGGCTTCCTCAGGAAGGAAGTG
TGCGGCGAATCCTGTGTGCAGACCCCTGCTGCCAAATCTGCAATGTTATGGCTCTGGAGATTAAGCAATT
GCTGGCAGGTGAGAACAACCAGATCTCCCTGACTTCACTGGGGCCATCACAGGGCTCCTCTTGCCTAGAG
GCTTTGTCCACATCTAGTGTGTCTTTTAAGCATAGTCAGGATCTGGGCTCCCCGAAATCCAAAGAGCTTT
CACTGGCATCTGTAACTCCAACACTGTCACAATTAATGGATCAGAAATCTTTAACCCAGTCAGCTGCCCG
GTCAGCTGGTGCAGACAGCGTCCAAGATTCCTGGGCTGATCACTTTCAGCGAGGACAGAGATCTCAAGTC
CCAGCTGTGTCCCAGGTCATGGGATCTCTGTCTTCAAACTTTGAGAAGCCTGGAATTCCTCTGAGCCAGC
AGGAGAGGACGAAAAACAACTCCAAATTTGTCCTGGAGAACCAAGAAGCTCCAGAAGTTGGCTTGGATAA
CAAGATGAAGCTGTTTCTGCACTGGATTAACCCTGAAATGAAAGATCGAAGGCATGAGGAATCCATTCTC
CTTTCTAAGGCTGAGACAGTGACCCAAGACAGGACAAAAAACATTGAGAAGAGTCCAACTGTCACCAAAG
ATCATGTGTGGGGAGCTACAACACAGAAGACAACAGAGGACCCTGAGGCTCAGCCTCCTTCTACTGAGGA
GGAAGGCCTGATCTTCTGTGATGCCCCCAGTGCCTAA

Translation (338 aa):
MLSPTFVLWDVGYPLYTYGSICIIALIIWQVKKSCQKLSLVPNRSCCRCHRRVQQKSGDRTSRARRTSQE
EAEKLWKLLFLMKSQGWLPQEGSVRRILCADPCCQICNVMALEIKQLLAGENNQISLTSLGPSQGSSCLE
ALSTSSVSFKHSQDLGSPKSKELSLASVTPTLSQLMDQKSLTQSAARSAGADSVQDSWADHFQRGQRSQV
PAVSQVMGSLSSNFEKPGIPLSQQERTKNNSKFVLENQEAPEVGLDNKMKLFLHWINPEMKDRRHEESIL
LSKAETVTQDRTKNIEKSPTVTKDHVWGATTQKTTEDPEAQPPSTEEEGLIFCDAPSA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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