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Report for CCDS83142.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
83142.1 Public Homo sapiens 6 SOD2 24 110 108 CCDS HistoryNCBI Gene:6648Re-query CCDS DB by CCDS ID:83142.1Re-query CCDS DB by GeneID:6648See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 83142.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000452684.2 ENSP00000406713.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000452684.2Link to Ensembl Protein Viewer:ENSP00000406713.2Re-query CCDS DB by Nucleotide ID:ENST00000452684Re-query CCDS DB by Protein ID:ENSP00000406713
Original member Current member NCBI NM_001322816.2 NP_001309745.1 Accepted alive Link to Nucleotide Sequence:NM_001322816.2Link to Protein Sequence:NP_001309745.1Re-query CCDS DB by Nucleotide ID:NM_001322816Re-query CCDS DB by Protein ID:NP_001309745Link to BLAST:NP_001309745.1

Chromosomal Locations for CCDS 83142.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 159692464 159692863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 159693145 159693167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (423 nt):
ATGTTGAGCCGGGCAGTGTGCGGCACCAGCAGGCAGCTGGCTCCGGTTTTGGGGTATCTGGGCTCCAGGC
AGAAGCACAGCCTCCCCGACCTGCCCTACGACTACGGCGCCCTGGAACCTCACATCAACGCGCAGATCAT
GCAGCTGCACCACAGCAAGCACCACGCGGCCTACGTGAACAACCTGAACGTCACCGAGGAGAAGTACCAG
GAGGCGTTGGCCAAGGGTAGGTTCCAGGCTGAGCGGCGGGAGGCAGTCCCCGGCAGAGGCGACCCCAGGG
AGCCAGGCCCCATACGGACGGGCCTCTCCGTGGAGGAGAACTCGCTTCGTATTTGTACCGGTTCCGAGTT
TTCCAGGCACGATAGTCTCTCTTTTAAACACATGGTCTACCTCATTGTAGAAGGAGTGCCTCGATGGGTT
TGA

Translation (140 aa):
MLSRAVCGTSRQLAPVLGYLGSRQKHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVNNLNVTEEKYQ
EALAKGRFQAERREAVPGRGDPREPGPIRTGLSVEENSLRICTGSEFSRHDSLSFKHMVYLIVEGVPRWV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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