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Report for CCDS83078.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
83078.1 Public Homo sapiens 6 CPNE5 24 110 108 CCDS HistoryNCBI Gene:57699Re-query CCDS DB by CCDS ID:83078.1Re-query CCDS DB by GeneID:57699See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 83078.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000393189.2 ENSP00000376885.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000393189.2Link to Ensembl Protein Viewer:ENSP00000376885.2Re-query CCDS DB by Nucleotide ID:ENST00000393189Re-query CCDS DB by Protein ID:ENSP00000376885
Original member Current member NCBI NM_001314018.2 NP_001300947.1 Accepted alive Link to Nucleotide Sequence:NM_001314018.2Link to Protein Sequence:NP_001300947.1Re-query CCDS DB by Nucleotide ID:NM_001314018Re-query CCDS DB by Protein ID:NP_001300947Link to BLAST:NP_001300947.1
Original member Current member NCBI NM_001376890.1 NP_001363819.1 Accepted alive Link to Nucleotide Sequence:NM_001376890.1Link to Protein Sequence:NP_001363819.1Re-query CCDS DB by Nucleotide ID:NM_001376890Re-query CCDS DB by Protein ID:NP_001363819Link to BLAST:NP_001363819.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001300947.1 301 Q9HCH3-2 301 100% 0 0
NP_001363819.1 301 Q9HCH3-2 301 100% 0 0

Chromosomal Locations for CCDS 83078.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 36742268 36742486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 36743689 36743762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 36744268 36744325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 36745048 36745150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 36745388 36745515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 36746396 36746577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 36748221 36748267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 36753034 36753095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 36756245 36756277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (906 nt):
ATGAAGAAAAAGAAATACGTGAATTCTGGCACAGTCACCCTGCTTTCCTTTGCTGTGGAGTCAGAGTGCA
CCTTCCTTGACTACATCAAAGGAGGGACCCAGATCAACTTCACTGTGGCCATTGATTTCACTGCCTCCAA
TGGGAACCCCTCACAGTCCACATCCCTGCACTACATGAGCCCCTACCAGCTGAACGCCTACGCGCTGGCG
CTGACTGCCGTCGGAGAGATCATCCAGCACTACGACAGTGACAAGATGTTCCCTGCCCTGGGCTTCGGGG
CCAAGCTGCCCCCGGATGGCAGAGTGTCCCACGAGTTCCCACTGAATGGCAACCAGGAGAACCCCTCATG
CTGTGGCATCGACGGCATCCTGGAGGCCTACCACCGCAGCCTGCGCACTGTGCAGCTGTACGGCCCCACC
AACTTTGCCCCCGTGGTCACCCACGTGGCCAGGAATGCAGCGGCCGTGCAGGATGGCTCCCAGTACTCGG
TGCTGCTCATCATTACTGATGGGGTCATCTCGGACATGGCGCAGACCAAGGAGGCCATTGTCAACGCTGC
CAAGCTCCCCATGTCCATCATTATCGTCGGCGTGGGCCAGGCAGAGTTCGACGCCATGGTGGAGCTGGAT
GGCGACGACGTGCGGATCTCCTCCCGGGGGAAGCTGGCTGAACGCGACATCGTCCAGTTTGTACCCTTCC
GGGACTACGTGGACCGCACAGGCAACCACGTGCTGAGCATGGCCCGCCTGGCCCGAGACGTGCTGGCAGA
GATCCCTGACCAACTGGTGTCCTACATGAAGGCACAGGGCATTCGCCCGCGTCCCCCACCCGCAGCACCA
ACCCACTCGCCCTCGCAGTCCCCAGCCCGCACGCCCCCTGCGTCCCCCCTGCACACGCACATCTGA

Translation (301 aa):
MKKKKYVNSGTVTLLSFAVESECTFLDYIKGGTQINFTVAIDFTASNGNPSQSTSLHYMSPYQLNAYALA
LTAVGEIIQHYDSDKMFPALGFGAKLPPDGRVSHEFPLNGNQENPSCCGIDGILEAYHRSLRTVQLYGPT
NFAPVVTHVARNAAAVQDGSQYSVLLIITDGVISDMAQTKEAIVNAAKLPMSIIIVGVGQAEFDAMVELD
GDDVRISSRGKLAERDIVQFVPFRDYVDRTGNHVLSMARLARDVLAEIPDQLVSYMKAQGIRPRPPPAAP
THSPSQSPARTPPASPLHTHI


Links Key
 Links to:   History report
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  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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