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Report for CCDS83048.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
83048.1 Public Homo sapiens 5 SNCB 24 110 108 CCDS HistoryNCBI Gene:6620Re-query CCDS DB by CCDS ID:83048.1Re-query CCDS DB by GeneID:6620See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 83048.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000614675.4 ENSP00000479489.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000614675.4Link to Ensembl Protein Viewer:ENSP00000479489.1Re-query CCDS DB by Nucleotide ID:ENST00000614675Re-query CCDS DB by Protein ID:ENSP00000479489
Original member Current member NCBI NM_001318034.2 NP_001304963.1 Accepted alive Link to Nucleotide Sequence:NM_001318034.2Link to Protein Sequence:NP_001304963.1Re-query CCDS DB by Nucleotide ID:NM_001318034Re-query CCDS DB by Protein ID:NP_001304963Link to BLAST:NP_001304963.1
Original member Current member NCBI NM_001318036.2 NP_001304965.1 Accepted alive Link to Nucleotide Sequence:NM_001318036.2Link to Protein Sequence:NP_001304965.1Re-query CCDS DB by Nucleotide ID:NM_001318036Re-query CCDS DB by Protein ID:NP_001304965Link to BLAST:NP_001304965.1

Chromosomal Locations for CCDS 83048.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 176620811 176620843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 176621214 176621303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 176626398 176626516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 176629534 176629654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (363 nt):
ATGGACGTGTTCATGAAGGGCCTGTCCATGGCCAAGGAGGGCGTTGTGGCAGCCGCGGAGAAAACCAAGC
AGGGGGTCACCGAGGCGGCGGAGAAGACCAAGGAGGGCGTCCTCTACGTCGTGGCTGAAAAAACCAAGGA
ACAGGCCTCACATCTGGGAGGAGCTGTGTTCTCTGGGGCAGGGAACATCGCAGCAGCCACAGGACTGGTG
AAGAGGGAGGAATTCCCTACTGATCTGAAGCCAGAGGAAGTGGCCCAGGAAGCTGCTGAAGAACCACTGA
TTGAGCCCCTGATGGAGCCAGAAGGGGAGAGTTATGAGGACCCACCCCAGGAGGAATATCAGGAGTATGA
GCCAGAGGCGTAG

Translation (120 aa):
MDVFMKGLSMAKEGVVAAAEKTKQGVTEAAEKTKEGVLYVVAEKTKEQASHLGGAVFSGAGNIAAATGLV
KREEFPTDLKPEEVAQEAAEEPLIEPLMEPEGESYEDPPQEEYQEYEPEA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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