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Report for CCDS82818.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
82818.1 Public Homo sapiens 3 SLC9C1 24 110 108 CCDS HistoryNCBI Gene:285335Re-query CCDS DB by CCDS ID:82818.1Re-query CCDS DB by GeneID:285335See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 82818.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000487372.5 ENSP00000420688.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000487372.5Link to Ensembl Protein Viewer:ENSP00000420688.1Re-query CCDS DB by Nucleotide ID:ENST00000487372Re-query CCDS DB by Protein ID:ENSP00000420688
Original member Current member NCBI NM_001320531.2 NP_001307460.1 Accepted alive Link to Nucleotide Sequence:NM_001320531.2Link to Protein Sequence:NP_001307460.1Re-query CCDS DB by Nucleotide ID:NM_001320531Re-query CCDS DB by Protein ID:NP_001307460Link to BLAST:NP_001307460.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001307460.1 1129 Q4G0N8-2 1129 100% 0 0

Chromosomal Locations for CCDS 82818.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 112141272 112141281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 112151857 112151963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 112154997 112155049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 112167221 112167347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 112168877 112169062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 112169197 112169328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 112179531 112179701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 112180564 112180662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 112182133 112182258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 112199321 112199469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 112200711 112200762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 112202250 112202399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 112204218 112204403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 112208178 112208373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 112217442 112217561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 112221128 112221225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 112231361 112231486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 112239840 112240006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 112243995 112244076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 112262924 112263098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 112266238 112266340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 112269916 112270077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 112274897 112275025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 112277695 112277860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 112278729 112278857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 112280683 112280783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 112286704 112286791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3390 nt):
ATGGCTGGAATATTTAAGGAGTTTTTTTTCAGTACTGAGGACCTCCCTGAAGTCATTCTAACATTGTCTT
TGATCAGCTCCATTGGAGCATTTTTGAACCGGCACTTGGAAGACTTTCCAATTCCTGTCCCTGTGATATT
ATTTTTACTTGGATGCAGTTTTGAAGTATTAAGCTTTACATCTTCACAGGTCCAAAGATACGCAAACGCC
ATACAATGGATGAGTCCAGACTTATTTTTTCGTATATTTACACCAGTAGTTTTCTTTACTACTGCATTTG
ACATGGATACGTACATGCTTCAAAAGTTATTTTGGCAGATACTTTTAATTTCAATTCCCGGCTTTTTGGT
TAATTATATCTTAGTTCTTTGGCATCTGGCATCTGTAAATCAATTACTTTTGAAGCCTACCCAATGGTTA
TTATTTTCAGCTATCCTTGTGAGTTCAGATCCCATGCTAACCGCAGCTGCTATAAGAGACCTTGGGCTTT
CTAGAAGCCTCATCAGTTTAATTAATGGAGAAAGTCTGATGACCTCTGTTATATCATTAATTACATTTAC
TAGTATTATGGATTTTGACCAAAGACTACAAAGTAAAAGAAACCATACCTTAGCTGAAGAGATCGTGGGT
GGAATTTGTTCATATATTATAGCAAGTTTCTTGTTTGGAATTCTAAGTTCAAAACTGATTCAATTTTGGA
TGTCAACTGTTTTTGGTGATGATGTCAATCATATAAGTCTCATCTTTTCAATTCTGTATCTCATCTTTTA
TATTTGTGAGTTAGTTGGAATGTCAGGAATATTTACTCTGGCCATTGTGGGACTTCTTTTAAATTCTACA
AGTTTTAAAGCAGCAATTGAAGAAACACTTCTTCTTGAATTTCTGACCCTTCTTTTAATAAGCCCTGTTT
TGTCTCGAGTTGGTCATGAGTTCAGTTGGCGCTGGATATTCATAATGGTCTGTAGTGAAATGAAGGGGAT
GCCTAATATAAACATGGCCCTTCTGCTTGCCTACTCTGATCTTTATTTTGGATCTGACAAAGAAAAATCT
CAAATATTATTTCATGGAGTGTTAGTATGCCTAATAACCCTTGTTGTCAATAGATTTATTTTGCCAGTGG
CAGTTACTATACTAGGTCTTCGTGATGCCACATCAACAAAATATAAATCGGTTTGTTGCACATTTCAACA
CTTTCAAGAGCTAACCAAGTCTGCAGCCTCTGCCCTTAAATTTGACAAAGATCTTGCTAATGCTGATTGG
AACATGATTGAGAAAGCAATTACACTTGAAAACCCATACATGTTGAACGAAGAAGAAACAACAGAACATC
AGAAGGTGAAATGTCCACACTGTAACAAGGAAATAGATGAGATCTTTAACACTGAAGCAATGGAGCTGGC
CAACAGGCGTCTCTTGTCAGCACAAATAGCAAGCTACCAGAGACAATACAGGAATGAGATTCTGTCCCAG
AGTGCTGTCCAGGTGTTGGTTGGTGCAGCAGAAAGTTTTGGTGAGAAGAAGGGAAAATGTATGAGTCTTG
ATACAATAAAGAATTATTCTGAAAGCCAAAAAACAGTTACCTTTGCTAGAAAACTACTACTTAATTGGGT
GTATAATACCAGAAAGGAAAAAGAGGGCCCATCAAAATACTTCTTTTTTCGTATATGCCATACAATAGTA
TTTACTGAGGAATTTGAACATGTTGGATACCTTGTGATATTAATGAATATATTTCCCTTTATAATCTCTT
GGATATCCCAGTTAAATGTAATCTACCACAGCGAATTAAAACACACTAACTACTGTTTTCTTACACTTTA
TATTCTAGAGGCACTACTTAAGATAGCAGCAATGAGGAAGGACTTTTTTTCACATGCCTGGAACATATTC
GAGTTAGCAATTACATTAATTGGCATCTTACATGTAATACTTATTGAAATAGACACCATTAAGTATATTT
TTAATGAGACTGAAGTAATAGTCTTTATAAAAGTTGTTCAATTTTTTCGTATACTACGCATTTTCAAGCT
CATAGCACCAAAGTTGCTGCAAATAATAGATAAAAGAATGAGTCATCAGAAGACCTTTTGGTATGGAATA
CTAAAAGGCTATGTCCAAGGCGAAGCAGACATAATGACCATAATTGATCAGATTACAAGTTCTAAACAGA
TTAAACAGATGTTATTAAAGCAAGTGATAAGGAATATGGAACATGCTATAAAAGAGCTAGGCTACTTAGA
GTATGATCACCCAGAAATTGCTGTCACTGTGAAAACAAAGGAAGAAATTAATGTTATGCTCAATATGGCT
ACAGAAATTCTTAAGGCTTTTGGCTTAAAAGGAATTATTAGTAAAACTGAAGGTGCTGGAATTAATAAGT
TAATCATGGCCAAAAAGAAAGAGGTGCTTGATTCTCAATCTATTATCAGGCCTCTTACTGTTGAAGAAGT
TCTATATCATATTCCGTGGCTAGATAAAAACAAAGATTATATAAACTTCATTCAGGAAAAAGCCAAAGTT
GTAACATTTGATTGTGGAAATGATATATTTGAAGAAGGTGATGAGCCCAAAGGAATCTATATCATTATTT
CAGGCATGGTAAAGCTTGAAAAATCAAAGCCAGGTTTAGGGATTGATCAAATGGTGGAGTCAAAGGAGAA
AGATTTTCCGATAATTGACACAGACTATATGCTCAGTGGAGAAATAATAGGAGAGATAAACTGCTTAACT
AATGAACCTATGAAATATTCTGCCACCTGCAAAACTGTAGTGGAGACATGTTTTATTCCCAAAACTCACT
TGTATGATGCTTTTGAGCAATGCTCTCCTCTCATTAAACAAAAAATGTGGCTAAAACTTGGACTCGCTAT
TACAGCCAGAAAAATCAGAGAACACTTATCTTATGAGGATTGGAACTACAATATGCAACTAAAGCTCTCT
AATATTTATGTAGTAGATATACCAATGAGTACCAAAACTGATATTTATGATGAAAATCTAATCTATGTTA
TCCTCATACATGGAGCTGTAGAAGATTGTCTGTTACGAAAAACTTATAGAGCACCTTTCTTAATTCCTAT
AACATGCCATCAGATACAAAGTATTGAAGATTTCACAAAAGTAGTGATTATTCAAACTCCGATTAACATG
AAAACATTCAGAAGGAATATTAGAAAGTTTGTTCCTAAACATAAAAGTTATCTTACACCAGGATTAATAG
GTTCAGTTGGAACATTGGAAGAAGGCATTCAAGAAGAAAGAAATGTTAAGGAGGATGGAGCACACAGTGC
CGCCACTGCCAGGAGTCCCCAGCCTTGCTCCCTGCTGGGGACAAAGTTCAACTGTAAGGAGTCCCCTAGA
ATAAACCTAAGGAAAGTCAGGAAAGAGTAA

Translation (1129 aa):
MAGIFKEFFFSTEDLPEVILTLSLISSIGAFLNRHLEDFPIPVPVILFLLGCSFEVLSFTSSQVQRYANA
IQWMSPDLFFRIFTPVVFFTTAFDMDTYMLQKLFWQILLISIPGFLVNYILVLWHLASVNQLLLKPTQWL
LFSAILVSSDPMLTAAAIRDLGLSRSLISLINGESLMTSVISLITFTSIMDFDQRLQSKRNHTLAEEIVG
GICSYIIASFLFGILSSKLIQFWMSTVFGDDVNHISLIFSILYLIFYICELVGMSGIFTLAIVGLLLNST
SFKAAIEETLLLEFLTLLLISPVLSRVGHEFSWRWIFIMVCSEMKGMPNINMALLLAYSDLYFGSDKEKS
QILFHGVLVCLITLVVNRFILPVAVTILGLRDATSTKYKSVCCTFQHFQELTKSAASALKFDKDLANADW
NMIEKAITLENPYMLNEEETTEHQKVKCPHCNKEIDEIFNTEAMELANRRLLSAQIASYQRQYRNEILSQ
SAVQVLVGAAESFGEKKGKCMSLDTIKNYSESQKTVTFARKLLLNWVYNTRKEKEGPSKYFFFRICHTIV
FTEEFEHVGYLVILMNIFPFIISWISQLNVIYHSELKHTNYCFLTLYILEALLKIAAMRKDFFSHAWNIF
ELAITLIGILHVILIEIDTIKYIFNETEVIVFIKVVQFFRILRIFKLIAPKLLQIIDKRMSHQKTFWYGI
LKGYVQGEADIMTIIDQITSSKQIKQMLLKQVIRNMEHAIKELGYLEYDHPEIAVTVKTKEEINVMLNMA
TEILKAFGLKGIISKTEGAGINKLIMAKKKEVLDSQSIIRPLTVEEVLYHIPWLDKNKDYINFIQEKAKV
VTFDCGNDIFEEGDEPKGIYIIISGMVKLEKSKPGLGIDQMVESKEKDFPIIDTDYMLSGEIIGEINCLT
NEPMKYSATCKTVVETCFIPKTHLYDAFEQCSPLIKQKMWLKLGLAITARKIREHLSYEDWNYNMQLKLS
NIYVVDIPMSTKTDIYDENLIYVILIHGAVEDCLLRKTYRAPFLIPITCHQIQSIEDFTKVVIIQTPINM
KTFRRNIRKFVPKHKSYLTPGLIGSVGTLEEGIQEERNVKEDGAHSAATARSPQPCSLLGTKFNCKESPR
INLRKVRKE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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