NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS8276.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8276.1 Public Homo sapiens 11 CCDC81 24 110 108 CCDS HistoryNCBI Gene:60494Re-query CCDS DB by CCDS ID:8276.1Re-query CCDS DB by GeneID:60494See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8276.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000354755.5 ENSP00000346800.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000354755.5Link to Ensembl Protein Viewer:ENSP00000346800.1Re-query CCDS DB by Nucleotide ID:ENST00000354755Re-query CCDS DB by Protein ID:ENSP00000346800
Original member Current member NCBI NM_021827.5 NP_068599.3 Accepted alive Link to Nucleotide Sequence:NM_021827.5Link to Protein Sequence:NP_068599.3Re-query CCDS DB by Nucleotide ID:NM_021827Re-query CCDS DB by Protein ID:NP_068599Link to BLAST:NP_068599.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_068599.3 562 Q6ZN84-2 562 100% 0 0

Chromosomal Locations for CCDS 8276.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 86375164 86375242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86386051 86386112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86387516 86387659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86395334 86395413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86397621 86397742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86400678 86400801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86407614 86407701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86408127 86408270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86409261 86409365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86412387 86412559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86414789 86414867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86415093 86415313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86419928 86420053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 86422574 86422715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1689 nt):
ATGTTGGATACGATCGCCCGTGCCCTGCAGGACCTGGGCAGGCAGGTGCTGCCCACTCTGCCCTCGCTGA
GCCAGGAGGAAGTCTCTATTATCTGGGGGAATGTATCAGAATTTGTGAGACGGCAGTTAACCCTGCACAA
GGGGGTTCAGATTCCAGCATTTGGAACTTTCACTTTCATAAGACAAAAGCTTGAGGTGGGAAACAACAAA
TTTATCTTAATCCAGAGGCCTGTGTTTATCATGGTGGAGAAGCTAGTGCAGATTCATGGACTCAAACAAA
ACAAAAGGCCTGGCACTGTGGACTCGGTGTTGTCTAGCAGAGAGGCCTTGAGGAAGTGGCCCAGCAGTGT
GCTTGCGTTTCCAAGGATTGAGCTCAAGGAGATGGAAAACAAACTGCCTATGGAGACCCTTGTAGAAGAA
TGTGGAGAGAATAGAGAAAGGAAGTGCAAGTTAAAAGACCAGTCAGACAAAGAAGAAGGCACCAGAGATA
TCTCATCACCCAAAAGACTTCGAGATAGACAAGCTTTGTTCCCTGCCAAAGTGACAAATGTCAGCTTGCT
GGAAAAGTTTGAACGAAGTGAGAGTGGTGGGAAGATTATGACCCCTGAAAGCTTATCATATCCAAGTTGT
CTGAAACACGACAGTGAGATGAAGCCCCAAACATCTCCAGCTTGCCAGGATCATAACAAGGCAGGACAGG
AAATGTGCTATGTATGTTTGCAACGAGCACAACGAAATTCCCTGTTGTACTACAGTGAGGAAAGGAGGAG
AGAGATAGAAGATGAGAGACTCATACAGCAGTATCAGATGTTAAAGGATCAGGAGGCTCTCTTCAGACAC
CAGATGAAAAGTCTGGCTACTAGAGAACAGAATCAGAAAAATGCTGCCTATAATCTTGGAGTTGCTGAAG
CTATAAGAAACCACAAGAATGAGAAACCGGAATTTTATAAATCCTTCCTATTTGACAAACGGCCACTCAG
TCCTGCGCTTAATGCTCTTAAGCAAGAGGAATATTCCCGGAGTCTCCTGAAACAAATGGATAACAGACAG
GAAAACGAAATAAAGCAAAGACAATACAGAGAGTTGATGGACCGCCTGGAACAAGTGCAACTCACAGAGG
AACTTGCTGCGCAAAGAGCGAAATTTTTAAAAGATAAGATGGAAGAAACACAGTGTTACAAGAGAGCTTT
GGATGCACAGATAAAGAACAAACCCTCTCGGCTGCCCCCCTTTGAGCCAGACTCCTCTGAGCCCATCTTT
GGTAAGAATGAGGGTGAACTGATGGTGGAAAAGCAAAAGCGAGAACAAAATTACATGAAACACCAGCTGG
AGGCAGCTGCTAACCACAAGAGGAAAGCCATCCTGCATCAACTAGTGGACCAGAGGCGGGATTTGCAAAT
GCTTCAGAGGACACAAAGAGAGCACTTGGCAGACAGAACCGCTGAGCTGGAGCGAGTAAATAGAGTCAAC
CAATGCTTACAGGAGGACTGGGAAAGGAGTGCTGCGATGAAGAAGCAGCGAGACCTGGAGGACAAGGCTT
TTGAACGGGCTTCAGACAAGCTGTTTCTCCTAGACCAGTGTGAGAAGTATCGGCGCTGCAAGCAATGCCA
GAGGCGCACCTCCAACGTGGGCGAGAGCAACCTGTGGCCCCTGAACAAGTTCCTGCCTGGCTCCCGGTTG
CTTGTGTAA

Translation (562 aa):
MLDTIARALQDLGRQVLPTLPSLSQEEVSIIWGNVSEFVRRQLTLHKGVQIPAFGTFTFIRQKLEVGNNK
FILIQRPVFIMVEKLVQIHGLKQNKRPGTVDSVLSSREALRKWPSSVLAFPRIELKEMENKLPMETLVEE
CGENRERKCKLKDQSDKEEGTRDISSPKRLRDRQALFPAKVTNVSLLEKFERSESGGKIMTPESLSYPSC
LKHDSEMKPQTSPACQDHNKAGQEMCYVCLQRAQRNSLLYYSEERRREIEDERLIQQYQMLKDQEALFRH
QMKSLATREQNQKNAAYNLGVAEAIRNHKNEKPEFYKSFLFDKRPLSPALNALKQEEYSRSLLKQMDNRQ
ENEIKQRQYRELMDRLEQVQLTEELAAQRAKFLKDKMEETQCYKRALDAQIKNKPSRLPPFEPDSSEPIF
GKNEGELMVEKQKREQNYMKHQLEAAANHKRKAILHQLVDQRRDLQMLQRTQREHLADRTAELERVNRVN
QCLQEDWERSAAMKKQRDLEDKAFERASDKLFLLDQCEKYRRCKQCQRRTSNVGESNLWPLNKFLPGSRL
LV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH