NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS82682.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
82682.1 Public Homo sapiens 21 SLX9 24 110 108 CCDS HistoryNCBI Gene:85395Re-query CCDS DB by CCDS ID:82682.1Re-query CCDS DB by GeneID:85395See the combined annotation on chromosome 21 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 82682.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000397826.7 ENSP00000380926.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000397826.7Link to Ensembl Protein Viewer:ENSP00000380926.3Re-query CCDS DB by Nucleotide ID:ENST00000397826Re-query CCDS DB by Protein ID:ENSP00000380926
Original member Current member NCBI NM_001316984.2 NP_001303913.1 Accepted alive Link to Nucleotide Sequence:NM_001316984.2Link to Protein Sequence:NP_001303913.1Re-query CCDS DB by Nucleotide ID:NM_001316984Re-query CCDS DB by Protein ID:NP_001303913Link to BLAST:NP_001303913.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001303913.1 215 Q9NSI2-2 215 100% 0 0

Chromosomal Locations for CCDS 82682.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 21 (NC_000021.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21See the combined annotation on chromosome 21 in Sequence Viewer

Chromosome Start Stop Links
21 44940058 44940186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 44943684 44943792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 44960100 44960168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 44967034 44967181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 44973197 44973265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 44976680 44976803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (648 nt):
ATGGGGAAAGTGAGGGGGTTGCGCGCCCGAGTGCACCAGGCTGCCGTGAGGCCGAAAGGGGAGGCCGCCC
CCGGCCCCGCGCCCCCTGCCCCGGAGGCGACCCCTCCGCCGGCCTCGGCCGCGGGGAAGGACTGGGCGTT
CATCAACACCAACATCTTTGCCAGGACCAAGATAGACCCCAGCGCCTTGGTGCAGAAGCTGGAGCTGGAC
GTGAGGAGTGTCACTTCCGTCAGGAGAGGTGCAGAGGCCAAGACCGTTTTGCCCAAGAAGGAGAAAATGA
AGCTGAGGCGTGAGCAATGGTTGCAGAAAATCGAAGCCATAAAACTGGCTGAGCAGAAGCACAGGGAGGA
GCGGAGGCGGAGGGCCACGGTGGTGGTGGGGGACCTGCACCCTCTCAGGGATGCCCTGCCCGAGCTGCTG
GGGCTCGAGGCTGGCAGCCGGCGCCAAGCCCGCAGCAGGGAGAGCAACAAGCCCCGGCCCTCAGAGCTCA
GCCGGATGAGCGCAGCCCAGAGACAGCAGCTTCTCGAGGAAGAAAGGACCCGGTTTCAGGAGCTGCTGGC
CAGTCCGGCCTACAGAGCCAGCCCCCTGGTGGCCATCGGGCAGACGCTGGCCCGGCAGATGCAGCTGGAA
GATGGCGGCCAGCTCTGA

Translation (215 aa):
MGKVRGLRARVHQAAVRPKGEAAPGPAPPAPEATPPPASAAGKDWAFINTNIFARTKIDPSALVQKLELD
VRSVTSVRRGAEAKTVLPKKEKMKLRREQWLQKIEAIKLAEQKHREERRRRATVVVGDLHPLRDALPELL
GLEAGSRRQARSRESNKPRPSELSRMSAAQRQQLLEEERTRFQELLASPAYRASPLVAIGQTLARQMQLE
DGGQL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH