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Report for CCDS8266.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8266.1 Public Homo sapiens 11 CCDC90B 24 110 108 CCDS HistoryNCBI Gene:60492Re-query CCDS DB by CCDS ID:8266.1Re-query CCDS DB by GeneID:60492See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8266.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000529689.6 ENSP00000434724.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000529689.6Link to Ensembl Protein Viewer:ENSP00000434724.1Re-query CCDS DB by Nucleotide ID:ENST00000529689Re-query CCDS DB by Protein ID:ENSP00000434724
Original member Current member NCBI NM_021825.5 NP_068597.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_021825.5Link to Protein Sequence:NP_068597.2Re-query CCDS DB by Nucleotide ID:NM_021825Re-query CCDS DB by Protein ID:NP_068597Link to BLAST:NP_068597.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_068597.2 254 Q9GZT6-1 254 100% 0 0

Chromosomal Locations for CCDS 8266.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 83261911 83261966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 83265865 83265979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 83273647 83273700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 83273793 83273864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 83273951 83273992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 83274639 83274740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 83278726 83278829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 83280141 83280260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 83285873 83285972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (765 nt):
ATGAATAGTCGCCAGGCTTGGCGGCTCTTTCTCTCCCAAGGCAGAGGAGATCGTTGGGTTTCAAGGCCCC
GCGGGCATTTCTCGCCGGCCCTGCGGAGAGAGTTCTTCACTACCACAACCAAGGAGGGATATGATAGGCG
GCCAGTGGATATAACTCCTTTAGAACAAAGGAAATTAACTTTTGATACCCATGCATTGGTTCAGGACTTG
GAAACTCATGGATTTGACAAAACACAAGCAGAAACAATTGTATCAGCGTTAACTGCTTTATCAAATGTCA
GCCTGGATACTATCTATAAAGAGATGGTCACTCAAGCTCAACAGGAAATAACAGTACAACAGCTAATGGC
TCATTTGGATGCTATCAGGAAAGACATGGTCATCCTAGAGAAAAGTGAATTTGCAAATCTGAGAGCAGAG
AATGAGAAAATGAAAATTGAATTAGACCAAGTTAAGCAACAACTAATGCATGAAACCAGTCGAATCAGAG
CAGATAATAAACTGGATATCAACTTAGAAAGGAGCAGAGTAACAGATATGTTTACAGATCAAGAAAAGCA
ACTTATGGAAACAACTACAGAATTTACAAAAAAGGATACTCAAACCAAAAGTATTATTTCAGAGACCAGT
AATAAAATTGACGCTGAAATTGCTTCCTTAAAAACACTGATGGAATCTAACAAACTTGAGACAATTCGTT
ATCTTGCAGCTTCGGTGTTTACTTGCCTGGCAATAGCATTGGGATTTTATAGATTCTGGAAGTAG

Translation (254 aa):
MNSRQAWRLFLSQGRGDRWVSRPRGHFSPALRREFFTTTTKEGYDRRPVDITPLEQRKLTFDTHALVQDL
ETHGFDKTQAETIVSALTALSNVSLDTIYKEMVTQAQQEITVQQLMAHLDAIRKDMVILEKSEFANLRAE
NEKMKIELDQVKQQLMHETSRIRADNKLDINLERSRVTDMFTDQEKQLMETTTEFTKKDTQTKSIISETS
NKIDAEIASLKTLMESNKLETIRYLAASVFTCLAIALGFYRFWK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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