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Report for CCDS82226.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
82226.1 Public Homo sapiens 17 GPS1 24 110 108 CCDS HistoryNCBI Gene:2873Re-query CCDS DB by CCDS ID:82226.1Re-query CCDS DB by GeneID:2873See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 82226.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000578552.6 ENSP00000462265.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000578552.6Link to Ensembl Protein Viewer:ENSP00000462265.1Re-query CCDS DB by Nucleotide ID:ENST00000578552Re-query CCDS DB by Protein ID:ENSP00000462265
Original member Current member NCBI NM_001321092.3 NP_001308021.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001321092.3Link to Protein Sequence:NP_001308021.1Re-query CCDS DB by Nucleotide ID:NM_001321092Re-query CCDS DB by Protein ID:NP_001308021Link to BLAST:NP_001308021.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001308021.1 487 Q13098-5 487 100% 0 0

Chromosomal Locations for CCDS 82226.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 82051932 82051964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 82053274 82053366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 82053868 82054049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 82054510 82054810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 82054898 82054975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 82055162 82055222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 82055740 82055825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 82056001 82056095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 82056286 82056391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 82056470 82056550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 82056629 82056766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 82056840 82056974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 82057053 82057127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1464 nt):
ATGCCGCTGCCGGTTCAGGTGTTTAACTTGCAGGGGGCCGTGGAGCCCATGCAGATCGACGTGGACCCCC
AGGAAGACCCGCAGAATGCACCTGACGTCAACTACGTGGTGGAGAACCCCAGCCTGGATCTGGAACAGTA
CGCGGCCAGCTACAGCGGCCTGATGCGCATCGAACGGCTGCAGTTCATTGCTGATCACTGCCCCACGCTG
CGGGTGGAGGCCCTGAAGATGGCCCTCTCCTTCGTGCAGAGAACCTTTAACGTGGACATGTACGAGGAGA
TCCACCGCAAGCTCTCAGAGGCCACCAGGGAGCTGCAGAACGCACCCGACGCCATCCCTGAGAGCGGCGT
GGAGCCCCCAGCCCTGGACACGGCCTGGGTGGAGGCCACGCGGAAGAAGGCGCTGCTGAAGCTGGAGAAG
CTGGACACAGACCTGAAGAACTACAAGGGCAACTCCATCAAAGAGAGCATCCGGCGCGGCCACGACGACC
TGGGCGACCACTACCTGGACTGTGGGGACCTCAGCAACGCCCTCAAGTGCTATTCCCGGGCCCGGGACTA
CTGCACCAGCGCCAAACACGTCATCAACATGTGCCTCAATGTCATCAAGGTCAGCGTCTACTTGCAGAAT
TGGTCTCATGTGCTCAGCTACGTCAGCAAGGCTGAGTCCACCCCAGAGATTGCCGAGCAGCGAGGAGAGC
GTGACAGCCAGACCCAGGCCATCCTCACCAAGCTCAAGTGTGCCGCAGGCTTGGCAGAGCTGGCCGCCAG
GAAGTACAAGCAGGCTGCCAAGTGCCTCCTGCTGGCTTCCTTTGATCACTGTGACTTCCCTGAGCTGCTG
TCCCCCAGCAACGTGGCCATCTACGGTGGCCTGTGCGCCTTGGCTACCTTTGACCGGCAGGAGCTGCAGC
GCAATGTCATCTCCAGCAGCTCCTTCAAGTTGTTCTTGGAGCTGGAGCCACAGGTCCGAGACATCATCTT
CAAATTCTACGAGTCCAAGTACGCCTCATGTCTCAAGATGCTGGACGAGATGAAGGACAACCTGCTCCTG
GACATGTATCTGGCCCCCCATGTCAGGACCCTGTACACCCAGATTCGCAACCGTGCCCTCATCCAGTATT
TCAGCCCCTACGTGTCAGCCGACATGCATAGGATGGCGGCAGCCTTCAATACCACGGTGGCCGCCCTGGA
GGACGAGCTGACGCAGCTAATCCTGGAGGGGCTGATCAGTGCCCGTGTGGACTCACACAGCAAGATCCTA
TACGCCCGGGACGTGGATCAGCGCAGCACCACCTTTGAGAAGTCTCTGTTGATGGGCAAGGAGTTCCAGC
GCCGCGCCAAGGCCATGATGCTGCGGGCAGCTGTGCTCCGCAACCAGATCCATGTCAAGTCCCCGCCCAG
AGAAGGGAGCCAGGGGGAGCTGACTCCAGCCAACAGCCAGTCCCGGATGAGCACCAACATGTGA

Translation (487 aa):
MPLPVQVFNLQGAVEPMQIDVDPQEDPQNAPDVNYVVENPSLDLEQYAASYSGLMRIERLQFIADHCPTL
RVEALKMALSFVQRTFNVDMYEEIHRKLSEATRELQNAPDAIPESGVEPPALDTAWVEATRKKALLKLEK
LDTDLKNYKGNSIKESIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTSAKHVINMCLNVIKVSVYLQN
WSHVLSYVSKAESTPEIAEQRGERDSQTQAILTKLKCAAGLAELAARKYKQAAKCLLLASFDHCDFPELL
SPSNVAIYGGLCALATFDRQELQRNVISSSSFKLFLELEPQVRDIIFKFYESKYASCLKMLDEMKDNLLL
DMYLAPHVRTLYTQIRNRALIQYFSPYVSADMHRMAAAFNTTVAALEDELTQLILEGLISARVDSHSKIL
YARDVDQRSTTFEKSLLMGKEFQRRAKAMMLRAAVLRNQIHVKSPPREGSQGELTPANSQSRMSTNM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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