NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS82040.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
82040.1 Public Homo sapiens 17 RNF167 24 110 108 CCDS HistoryNCBI Gene:26001Re-query CCDS DB by CCDS ID:82040.1Re-query CCDS DB by GeneID:26001See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 82040.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000576229.5 ENSP00000458189.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000576229.5Link to Ensembl Protein Viewer:ENSP00000458189.1Re-query CCDS DB by Nucleotide ID:ENST00000576229Re-query CCDS DB by Protein ID:ENSP00000458189
Original member Current member NCBI NM_001320362.2 NP_001307291.1 Accepted alive Link to Nucleotide Sequence:NM_001320362.2Link to Protein Sequence:NP_001307291.1Re-query CCDS DB by Nucleotide ID:NM_001320362Re-query CCDS DB by Protein ID:NP_001307291Link to BLAST:NP_001307291.1
Original member Current member NCBI NM_001320363.2 NP_001307292.1 Accepted alive Link to Nucleotide Sequence:NM_001320363.2Link to Protein Sequence:NP_001307292.1Re-query CCDS DB by Nucleotide ID:NM_001320363Re-query CCDS DB by Protein ID:NP_001307292Link to BLAST:NP_001307292.1
Original member Current member NCBI NM_001320364.2 NP_001307293.1 Accepted alive Link to Nucleotide Sequence:NM_001320364.2Link to Protein Sequence:NP_001307293.1Re-query CCDS DB by Nucleotide ID:NM_001320364Re-query CCDS DB by Protein ID:NP_001307293Link to BLAST:NP_001307293.1
Original member Current member NCBI NM_001320365.2 NP_001307294.1 Accepted alive Link to Nucleotide Sequence:NM_001320365.2Link to Protein Sequence:NP_001307294.1Re-query CCDS DB by Nucleotide ID:NM_001320365Re-query CCDS DB by Protein ID:NP_001307294Link to BLAST:NP_001307294.1
Original member Current member NCBI NM_001370311.1 NP_001357240.1 Accepted alive Link to Nucleotide Sequence:NM_001370311.1Link to Protein Sequence:NP_001357240.1Re-query CCDS DB by Nucleotide ID:NM_001370311Re-query CCDS DB by Protein ID:NP_001357240Link to BLAST:NP_001357240.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001307291.1 315 Q9H6Y7-2 315 100% 0 0
NP_001307292.1 315 Q9H6Y7-2 315 100% 0 0
NP_001307293.1 315 Q9H6Y7-2 315 100% 0 0
NP_001307294.1 315 Q9H6Y7-2 315 100% 0 0
NP_001357240.1 315 Q9H6Y7-2 315 100% 0 0

Chromosomal Locations for CCDS 82040.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 4941098 4941157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4942341 4942466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4942577 4942664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4942851 4942941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4943179 4943284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4943426 4943519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4944558 4944638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 4944715 4945016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (948 nt):
ATGGACTTTGCAGACCTTCCAGCTCTGTTTGGGGCTACCTTGAGCCAGGAGGGCCTCCAGGGGTTCCTTG
TGGAGGCTCACCCAGACAATGCCTGCAGCCCCATTGCCCCACCACCCCCAGCCCCGGTCAATGGGTCAGT
CTTTATTGCGCTGCTTCGAAGATTCGACTGCAACTTTGACCTCAAGGTCCTAAATGCCCAGAAGGCTGGA
TATGGTGCCGCTGTAGTACACAATGTGAATTCCAATGAACTTCTGAACATGGTGTGGAATAGTGAGGAAA
TCCAGCAGCAGATCTGGATCCCGTCTGTATTTATTGGGGAGAGAAGCTCCGAGTACCTGCGTGCCCTCTT
TGTCTACGAGAAGGGGGCTCGGGTGCTTCTGGTTCCAGACAATACCTTCCCCTTGGGCTATTACCTCATC
CCTTTCACAGGGATTGTGGGACTGCTGGTTTTGGCCATGGGAGCAGTAATGATAGCTCGTTGTATCCAGC
ACCGGAAACGGCTCCAGCGGAATCGACTTACCAAAGAGCAACTGAAACAGATTCCTACACATGACTATCA
GAAGGGAGACCAGTATGATGTCTGTGCCATTTGCCTGGATGAATATGAGGATGGGGACAAGCTGCGGGTA
CTCCCCTGTGCTCATGCCTACCACAGCCGCTGCGTGGACCCCTGGCTCACTCAGACCCGGAAGACCTGCC
CCATTTGCAAGCAGCCTGTTCATCGGGGTCCTGGGGACGAAGACCAAGAGGAAGAAACTCAAGGGCAAGA
GGAGGGTGATGAAGGGGAGCCAAGGGACCACCCTGCCTCAGAAAGGACCCCACTTTTGGGTTCTAGCCCC
ACTCTTCCCACCTCCTTTGGTTCCTTAGCCCCAGCTCCCCTTGTTTTTCCTGGGCCTTCAACAGATCCCC
CACTGTCCCCTCCCTCTTCCCCTGTTATCCTGGTCTAA

Translation (315 aa):
MDFADLPALFGATLSQEGLQGFLVEAHPDNACSPIAPPPPAPVNGSVFIALLRRFDCNFDLKVLNAQKAG
YGAAVVHNVNSNELLNMVWNSEEIQQQIWIPSVFIGERSSEYLRALFVYEKGARVLLVPDNTFPLGYYLI
PFTGIVGLLVLAMGAVMIARCIQHRKRLQRNRLTKEQLKQIPTHDYQKGDQYDVCAICLDEYEDGDKLRV
LPCAHAYHSRCVDPWLTQTRKTCPICKQPVHRGPGDEDQEEETQGQEEGDEGEPRDHPASERTPLLGSSP
TLPTSFGSLAPAPLVFPGPSTDPPLSPPSSPVILV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH