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Report for CCDS82035.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
82035.1 Public Homo sapiens 17 RAP1GAP2 24 110 108 CCDS HistoryNCBI Gene:23108Re-query CCDS DB by CCDS ID:82035.1Re-query CCDS DB by GeneID:23108See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 82035.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000540393.6 ENSP00000439688.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000540393.6Link to Ensembl Protein Viewer:ENSP00000439688.2Re-query CCDS DB by Nucleotide ID:ENST00000540393Re-query CCDS DB by Protein ID:ENSP00000439688
Original member Current member NCBI NM_001330058.2 NP_001316987.1 Accepted alive Link to Nucleotide Sequence:NM_001330058.2Link to Protein Sequence:NP_001316987.1Re-query CCDS DB by Nucleotide ID:NM_001330058Re-query CCDS DB by Protein ID:NP_001316987Link to BLAST:NP_001316987.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001316987.1 711 Q684P5-3 711 100% 0 0

Chromosomal Locations for CCDS 82035.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 2800528 2800550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 2905284 2905368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 2957759 2957794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 2962670 2962714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 2963430 2963462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 2963856 2964068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 2965540 2965643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 2980287 2980365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 2981195 2981248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 2984983 2985066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 2991297 2991397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 2995337 2995466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 2998221 2998376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 3005369 3005440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 3005955 3006041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 3008011 3008145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 3018061 3018198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 3020477 3020595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 3026008 3026121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 3026350 3026464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 3026944 3027070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 3030922 3030998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 3032411 3032419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2136 nt):
ATGCTGGCAAGTCTGAAGGTCAAGAAGCAGGAGCTGGCCAACAGCTCGGATGCGACCCTCCCAGACCGGC
CGCTCTCCCCTCCTCTCACGGCACCTCCCACCATGAAGTCGTCGGAGTTCTTTGAGATGCTGGAGAAAAT
GCAGGGGATCAAGCTTGAAGAGCAGAAGCCGGGACCCCAGAAGAACAAGGACGACTATATCCCATACCCC
AGCATCGACGAGGTTGTGGAGAAGGGAGGCCCGTACCCTCAGGTCATCCTGCCACAGTTTGGGGGCTATT
GGATCGAGGACCCGGAGAACGTGGGCACCCCAACATCGCTGGGGAGCAGCATCTGTGAGGAGGAGGAAGA
GGACAACCTCAGCCCCAACACATTTGGCTACAAGCTCGAGTGCAAGGGTGAAGCCAGGGCCTACCGGAGG
CACTTCCTGGGGAAGGATCATCTAAACTTTTACTGTACCGGCAGCAGCCTGGGGAACTTGATCCTGTCCG
TCAAGTGCGAGGAAGCAGAGGGGATCGAGTACCTCCGGGTCATCCTTAGGTCCAAACTGAAGACGGTACA
TGAGCGGATCCCCTTGGCTGGACTGAGCAAGCTTCCCAGTGTCCCTCAGATTGCAAAGGCTTTCTGTGAT
GATGCAGTGGGACTGAGATTCAATCCTGTCCTGTACCCCAAGGCCTCCCAAATGATTGTGTCCTATGATG
AGCATGAAGTCAACAACACATTCAAATTCGGAGTCATTTATCAAAAAGCCAGGCAGACCCTGGAGGAGGA
GCTATTTGGGAACAATGAGGAGAGCCCAGCTTTTAAGGAGTTCTTGGACCTGCTGGGGGACACGATCACA
CTGCAGGATTTCAAAGGTTTCCGAGGAGGCCTGGACGTGACCCACGGACAGACAGGGGTGGAATCAGTGT
ACACAACATTCCGGGACAGGGAGATCATGTTTCACGTTTCCACAAAGCTGCCATTTACCGACGGAGACGC
CCAGCAGCTCCAGAGAAAGAGACACATTGGAAATGACATCGTGGCCATCATCTTCCAAGAGGAAAACACG
CCGTTTGTCCCAGACATGATAGCCTCCAATTTCTTACATGCCTACATCGTCGTGCAGGTCGAGACCCCAG
GCACAGAGACCCCATCCTACAAGGTCTCTGTCACTGCGCGGGAAGATGTGCCCACCTTTGGTCCACCTCT
GCCCAGTCCCCCCGTTTTCCAGAAGGGCCCGGAATTCAGGGAGTTTCTGCTCACCAAGCTCACCAATGCC
GAGAACGCCTGCTGCAAGTCGGACAAGTTTGCAAAGCTGGAGGACCGGACCAGGGCTGCCCTCCTGGACA
ACCTTCACGATGAGCTCCACGCCCACACACAGGCCATGCTGGGACTGGGCCCAGAGGAGGACAAGTTTGA
GAATGGAGGCCACGGGGGGTTCCTGGAGTCTTTTAAGAGGGCCATCCGCGTACGCAGCCACTCCATGGAG
ACCATGGTGGGCGGCCAGAAGAAGTCGCACAGTGGGGGCATCCCTGGCAGCCTCAGCGGGGGCATCTCCC
ACAACAGCATGGAGGTCACCAAGACCACCTTCTCGCCTCCAGTGGTGGCGGCAACGGTGAAGAACCAGTC
ACGGAGTCCCATCAAGCGACGCTCGGGGCTCTTCCCCCGCCTGCACACGGGCTCAGAAGGCCAGGGCGAC
AGCCGGGCACGATGTGACAGCACATCCAGCACACCCAAGACCCCAGATGGTGGACACTCCTCTCAGGAGA
TAAAGTCTGAGACCTCATCCAATCCCAGCTCTCCGGAAATCTGCCCCAACAAGGAGAAGCCCTTCATGAA
GTTGAAGGAAAACGGCCGTGCCATCTCCCGCTCCTCCTCCAGCACCAGCAGCGTCAGCAGCACTGCAGGG
GAGGGCGAGGCCATGGAGGAGGGCGACAGTGGGGGCAGCCAGCCGTCCACGACCTCACCCTTCAAGCAGG
AGGTGTTTGTCTACAGCCCGTCCCCGAGCAGCGAGAGCCCCAGCCTGGGGGCAGCTGCCACCCCGATCAT
CATGAGCCGGAGTCCCACAGATGCCAAAAGCAGAAACTCCCCGAGATCGAACCTGAAATTCCGCTTTGAC
AAGCTCAGCCATGCCAGCTCTGGTGCGGGTCACTAA

Translation (711 aa):
MLASLKVKKQELANSSDATLPDRPLSPPLTAPPTMKSSEFFEMLEKMQGIKLEEQKPGPQKNKDDYIPYP
SIDEVVEKGGPYPQVILPQFGGYWIEDPENVGTPTSLGSSICEEEEEDNLSPNTFGYKLECKGEARAYRR
HFLGKDHLNFYCTGSSLGNLILSVKCEEAEGIEYLRVILRSKLKTVHERIPLAGLSKLPSVPQIAKAFCD
DAVGLRFNPVLYPKASQMIVSYDEHEVNNTFKFGVIYQKARQTLEEELFGNNEESPAFKEFLDLLGDTIT
LQDFKGFRGGLDVTHGQTGVESVYTTFRDREIMFHVSTKLPFTDGDAQQLQRKRHIGNDIVAIIFQEENT
PFVPDMIASNFLHAYIVVQVETPGTETPSYKVSVTAREDVPTFGPPLPSPPVFQKGPEFREFLLTKLTNA
ENACCKSDKFAKLEDRTRAALLDNLHDELHAHTQAMLGLGPEEDKFENGGHGGFLESFKRAIRVRSHSME
TMVGGQKKSHSGGIPGSLSGGISHNSMEVTKTTFSPPVVAATVKNQSRSPIKRRSGLFPRLHTGSEGQGD
SRARCDSTSSTPKTPDGGHSSQEIKSETSSNPSSPEICPNKEKPFMKLKENGRAISRSSSSTSSVSSTAG
EGEAMEEGDSGGSQPSTTSPFKQEVFVYSPSPSSESPSLGAAATPIIMSRSPTDAKSRNSPRSNLKFRFD
KLSHASSGAGH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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