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Report for CCDS81998.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
81998.1 Public Homo sapiens 16 CARMIL2 24 110 108 CCDS HistoryNCBI Gene:146206Re-query CCDS DB by CCDS ID:81998.1Re-query CCDS DB by GeneID:146206See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 81998.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000545661.5 ENSP00000441481.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000545661.5Link to Ensembl Protein Viewer:ENSP00000441481.1Re-query CCDS DB by Nucleotide ID:ENST00000545661Re-query CCDS DB by Protein ID:ENSP00000441481
Original member Current member NCBI NM_001317026.3 NP_001303955.1 Accepted alive Link to Nucleotide Sequence:NM_001317026.3Link to Protein Sequence:NP_001303955.1Re-query CCDS DB by Nucleotide ID:NM_001317026Re-query CCDS DB by Protein ID:NP_001303955Link to BLAST:NP_001303955.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001303955.1 1372 Q6F5E8-2 1372 100% 0 0

Chromosomal Locations for CCDS 81998.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 67645247 67645286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67645540 67645631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67645724 67645777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67646018 67646080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67646186 67646310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67646426 67646517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67646714 67646784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67646900 67646973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67647116 67647191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67647299 67647387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67647508 67647602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67647680 67647766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67647846 67647958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67648052 67648129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67648238 67648314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67648398 67648502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67648685 67648754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67648893 67648974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67649076 67649172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67649254 67649311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67649447 67649619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67649806 67649968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67650049 67650150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67651187 67651315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67651401 67651514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67651685 67651845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67651921 67652008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67652199 67652339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67652472 67652538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67653019 67653254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67654149 67654249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67654332 67654692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67654778 67654900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67656031 67656067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67656228 67656299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67656424 67656645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67657239 67657316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67657406 67657518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4119 nt):
ATGGCCCAGACCCCCGACGGCATCTCCTGTGAGCTCCGAGGCGAGATCACCAGGTTCCTGTGGCCCAAAG
AGGTGGAGCTGCTGCTGAAAACCTGGCTACCCGGGGAGGGTGCTGTGCAAAACCATGTCCTGGCACTGCT
ACGATGGAGAGCCTACCTGCTGCACACCACCTGCCTCCCGCTGAGGGTGGACTGCACGTTCAGCTACCTG
GAGGTCCAGGCCATGGCGCTGCAGGAGACACCCCCTCAGGTCACCTTTGAGCTGGAGTCCCTGCGTGAGC
TGGTCCTGGAGTTTCCTGGTGTGGCCGCCCTGGAACAGCTGGCCCAGCACGTGGCTGCAGCCATCAAGAA
GGTCTTCCCTCGCTCGACCCTTGGGAAGCTATTCCGGAGGCCCACACCAGCCTCCATGCTGGCTCGGCTG
GAGAGAAGCAGCCCCTCGGAGTCCACTGACCCCTGCAGCCCCTGTGGTGGCTTCTTGGAGACATACGAGG
CTCTGTGTGACTACAATGGCTTCCCTTTCCGAGAGGAGATTCAGTGGGACGTGGACACCATTTACCATCG
CCAGGGCTGCCGCCATTTCAGCCTGGGAGACTTCAGCCACCTCGGCAGTCGGGACCTGGCCTTGAGTGTG
GCTGCCCTGTCCTACAACCTGTGGTTCCGGTGCCTCTCCTGTGTGGACATGAAGCTGAGCCTTGAGGTCT
CAGAACAGATTCTGCACATGATGAGTCAGTCATCACACCTGGAGGAGCTGGTGCTGGAGACCTGCAGCCT
GAGGGGAGACTTTGTCCGACGACTGGCCCAGGCGCTGGCGGGACACTCAAGCTCTGGGCTGCGGGAGCTC
AGCCTCGCGGGGAACCTGCTGGATGACCGAGGCATGACTGCACTCAGCAGACACCTCGAGCGTTGTCCAG
GAGCCCTGAGGAGACTCAGCCTGGCCCAGACAGGGTTGACACCGCGAGGAATGAGGGCTCTGGGCCGGGC
ACTGGCCACCAATGCCGCCTTCGACTCCACCCTGACCCACCTGGACCTTTCTGGGAATCCTGGGGCGCTG
GGGGCCTCCGAGGACAGTGGGGGCCTCTATAGCTTCCTGAGCCGTCCTAACGTACTGTCGTTCCTGAATC
TCGCAGGCACCGACACTGCCCTGGACACTCTCTTCGCAGCGGTATCCCGAGGCTGCTGCACCAGCCTTAC
CCACCTCGACGCTTCGAGGAACGTCTTCTCCCGCACGAAGTCCCGCGCCGCGCCGGCCGCGCTGCAGCTC
TTCCTCAGCCGCGCGCGGACGCTGCGGCACCTGGGCCTGGCGGGCTGCAAGCTGCCGCCCGACGCGCTCA
GAGCCCTTTTGGATGGCCTCGCGCTCAACACGCACCTCCGCGACCTGCACCTGGACCTCAGCGCTTGCGA
GCTGCGCTCGGCCGGCGCCCAGGTGATACAAGACTTAGTGTGCGACGCAGGCGCTGTGAGCTCCCTGGAT
CTGGCGGATAACGGCTTCGGCTCAGACATGGTGACTCTGGTGCTGGCCATCGGGAGAAGCCGGTCCCTGA
GACATGTGGCGCTTGGAAGGAACTTCAACGTCCGGTGCAAGGAGACCCTGGACGACGTCCTGCACCGGAT
TGTCCAGCTCATGCAGGACGACGATTGTCCTCTTCAGTCTCTGTCGGTGGCTGAGTCTCGGCTGAAGCTG
GGTGCCAGCGTCCTACTCCGGGCCCTAGCCACCAATCCTAACCTGACCGCGCTGGATATCAGCGGCAACG
CCATGGGGGACGCGGGCGCCAAGTTGCTGGCCAAGGCGCTGCGGGTCAACTCGAGGCTCCGGTCTGTGGT
CTGGGACCGGAACCACACATCTGCTTTGGGTCTGCTGGACGTGGCGCAGGCGCTGGAGCAGAACCACAGC
CTGAAGGCCATGCCTCTGCCACTGAACGACGTGGCCCAGGCGCAGCGCAGCCGCCCGGAACTGACAGCAC
GTGCAGTCCATCAGATCCAAGCCTGTCTCTTGAGGAACAACCGCGCAGACCCTGCCTCTTCTGACCACAC
GACCCGCCTTCAGCCACTTGGTCTGGTCTCAGACCCCTCAGAGCAGGAAGTGAATGAATTGTGTCAGTCG
GTGCAGGAGCATGTGGAGCTGCTGGGCTGTGGGGCTGGGCCCCAGGGTGAAGCCGCTGTGCGCCAGGCCG
AGGATGCCATCCAAAATGCCAACTTCTCTCTCAGCATTCTCCCCATTCTATATGAAGCTGGAAGCTCCCC
AAGCCATCACTGGCAGCTTGGGCAGAAGCTGGAGGGCCTTCTGAGACAGGTGGGCGAGGTCTGCCGCCAG
GACATCCAGGACTTCACTCAGGCCACACTGGACACAGCAAGGAGCCTCTGCCCACAGATGCTGCAGGGAT
CCAGCTGGAGGGAGCAGCTAGAGGGGGTCCTGGCAGGCTCGAGGGGCCTCCCGGAGCTGCTCCCAGAGCA
GCTGCTGCAAGATGCCTTCACTAGGCTCAGGGACATGCGGCTATCAATCACGGGGACCTTGGCAGAGAGC
ATTGTGGCTCAGGCTTTGGCAGGCCTGAGTGCAGCCCGGGATCAGCTGGTGGAGAGTCTGGCTCAGCAGG
CAACAGTGACAATGCCCCCTGCCCTACCAGCACCGGATGGAGGTGAGCCCAGCCTCCTTGAGCCTGGGGA
ATTGGAAGGTCTTTTCTTCCCCGAGGAGAAGGAAGAGGAGAAGGAGAAGGATGACAGTCCTCCACAGAAA
TGGCCTGAGCTCAGCCACGGTCTTCACCTGGTCCCCTTCATTCACAGTGCTGCTGAGGAAGCGGAGCCGG
AGCCCGAGCTGGCGGCTCCGGGAGAAGATGCAGAGCCGCAGGCGGGGCCGTCCGCGCGCGGCTCTCCGAG
CCCTGCCGCCCCTGGGCCCCCGGCCGGCCCGCTGCCCCGCATGGACCTGCCACTGGCGGGGCAGCCCCTG
CGCCATCCGACCCGGGCCCGGCCGCGGCCGCGCCGCCAGCACCACCACCGCCCGCCGCCGGGGGGCCCCC
AGGTACCCCCAGCCTTGCCGCAGGAAGGGAATGGGCTCAGTGCCCGCGTGGACGAGGGCGTGGAGGAATT
CTTCTCCAAAAGGCTGATCCAGCAGGATCGCCTCTGGGCCCCCGAGGAGGACCCGGCCACTGAGGGGGGC
GCCACTCCTGTCCCCCGTACACTGCGAAAGAAGCTGGGCACCCTCTTTGCCTTCAAGAAGCCTCGTTCAA
CGCGGGGTCCACGGACTGATCTAGAGACCAGCCCTGGGGCAGCTCCCCGAACCCGAAAAACTACATTTGG
CGACCTACTGCGGCCGCCAACCCGTCCCAGCCGTGGTGAGGAGCTTGGTGGGGCTGAGGGGGACACCAGC
AGCCCTGACCCTGCCGGCAGGAGCCGACCTCGCTACACAAGAGATAGCAAGGCCTACTCGATGATACTGC
TGCCTGCCGAGGAGGAGGCAACGCTGGGTGCCAGACCCGACAAGCGGCGGCCCCTGGAGCGGGGAGAAAC
AGAACTGGCTCCATCCTTTGAACAGCGGGTACAAGTAATGCTGCAGAGGATAGGCGTCAGCCGAGGCAGC
GGGGGTGCCGAAGGCAAGAGGAAGCAAAGCAAAGATGGCGAGATCAAGAAAGCTGGCTCAGATGGTGACA
TTATGGACAGTTCCACGGAGGCCCCTCCCATCTCGATCAAGTCCCGCACCCACTCTGTGTCTGCTGACCC
TTCCTGCAGACCTGGCCCAGGGAGCCAGGGGCCTGAGTCTGCCACCTGGAAGACACTGGGGCAGCAGTTG
AATGCGGAGCTCAGGAGCCGTGGTTGGGGCCAACAGGATGGTCCAGGCCCTCCCTCCCCTGGTCAAAGCC
CAAGTCCCTGCAGAACCAGCCCCTCCCCAGACAGCCTGGGCCTCCCAGAGGACCCTTGCTTGGGCCCCAG
AAATGAAGAACGGCCCCTGAGGCTGCAGCGCTCCCCCGTCCTCAAACGCAGGCCAAAACTCGAGGCACCT
CCATCCCCAAGCCTAGGATCTGGCCTTGGAACCGAGCCTCTGCCCCCACAGCCCACAGAGCCCTCCAGCC
CTGAGCGGAGCCCACCCTCCCCAGCCACAGACCAAAGAGGCGGCGGCCCCAATCCCTGA

Translation (1372 aa):
MAQTPDGISCELRGEITRFLWPKEVELLLKTWLPGEGAVQNHVLALLRWRAYLLHTTCLPLRVDCTFSYL
EVQAMALQETPPQVTFELESLRELVLEFPGVAALEQLAQHVAAAIKKVFPRSTLGKLFRRPTPASMLARL
ERSSPSESTDPCSPCGGFLETYEALCDYNGFPFREEIQWDVDTIYHRQGCRHFSLGDFSHLGSRDLALSV
AALSYNLWFRCLSCVDMKLSLEVSEQILHMMSQSSHLEELVLETCSLRGDFVRRLAQALAGHSSSGLREL
SLAGNLLDDRGMTALSRHLERCPGALRRLSLAQTGLTPRGMRALGRALATNAAFDSTLTHLDLSGNPGAL
GASEDSGGLYSFLSRPNVLSFLNLAGTDTALDTLFAAVSRGCCTSLTHLDASRNVFSRTKSRAAPAALQL
FLSRARTLRHLGLAGCKLPPDALRALLDGLALNTHLRDLHLDLSACELRSAGAQVIQDLVCDAGAVSSLD
LADNGFGSDMVTLVLAIGRSRSLRHVALGRNFNVRCKETLDDVLHRIVQLMQDDDCPLQSLSVAESRLKL
GASVLLRALATNPNLTALDISGNAMGDAGAKLLAKALRVNSRLRSVVWDRNHTSALGLLDVAQALEQNHS
LKAMPLPLNDVAQAQRSRPELTARAVHQIQACLLRNNRADPASSDHTTRLQPLGLVSDPSEQEVNELCQS
VQEHVELLGCGAGPQGEAAVRQAEDAIQNANFSLSILPILYEAGSSPSHHWQLGQKLEGLLRQVGEVCRQ
DIQDFTQATLDTARSLCPQMLQGSSWREQLEGVLAGSRGLPELLPEQLLQDAFTRLRDMRLSITGTLAES
IVAQALAGLSAARDQLVESLAQQATVTMPPALPAPDGGEPSLLEPGELEGLFFPEEKEEEKEKDDSPPQK
WPELSHGLHLVPFIHSAAEEAEPEPELAAPGEDAEPQAGPSARGSPSPAAPGPPAGPLPRMDLPLAGQPL
RHPTRARPRPRRQHHHRPPPGGPQVPPALPQEGNGLSARVDEGVEEFFSKRLIQQDRLWAPEEDPATEGG
ATPVPRTLRKKLGTLFAFKKPRSTRGPRTDLETSPGAAPRTRKTTFGDLLRPPTRPSRGEELGGAEGDTS
SPDPAGRSRPRYTRDSKAYSMILLPAEEEATLGARPDKRRPLERGETELAPSFEQRVQVMLQRIGVSRGS
GGAEGKRKQSKDGEIKKAGSDGDIMDSSTEAPPISIKSRTHSVSADPSCRPGPGSQGPESATWKTLGQQL
NAELRSRGWGQQDGPGPPSPGQSPSPCRTSPSPDSLGLPEDPCLGPRNEERPLRLQRSPVLKRRPKLEAP
PSPSLGSGLGTEPLPPQPTEPSSPERSPPSPATDQRGGGPNP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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