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Report for CCDS81992.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
81992.1 Public Homo sapiens 16 CDH11 24 110 108 CCDS HistoryNCBI Gene:1009Re-query CCDS DB by CCDS ID:81992.1Re-query CCDS DB by GeneID:1009See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 81992.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000566827.5 ENSP00000457812.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000566827.5Link to Ensembl Protein Viewer:ENSP00000457812.1Re-query CCDS DB by Nucleotide ID:ENST00000566827Re-query CCDS DB by Protein ID:ENSP00000457812
Original member Current member NCBI NM_001330576.2 NP_001317505.1 Accepted alive Link to Nucleotide Sequence:NM_001330576.2Link to Protein Sequence:NP_001317505.1Re-query CCDS DB by Nucleotide ID:NM_001330576Re-query CCDS DB by Protein ID:NP_001317505Link to BLAST:NP_001317505.1

Chromosomal Locations for CCDS 81992.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 64947603 64948099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 64950767 64951018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 64971579 64971696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 64971931 64972064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 64972904 64973040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 64982048 64982301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 64988157 64988344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 64991768 64991935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 64992915 64993034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 64998562 64998706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2013 nt):
ATGGCTCAGGCGGTGGACAGGGACACCAATCGGCCACTGGAGCCACCGTCGGAATTCATTGTCAAGGTCC
AGGACATTAATGACAACCCTCCGGAGTTCCTGCACGAGACCTATCATGCCAACGTGCCTGAGAGGTCCAA
TGTGGGAACGTCAGTAATCCAGGTGACAGCTTCAGATGCAGATGACCCCACTTATGGAAATAGCGCCAAG
TTAGTGTACAGTATCCTCGAAGGACAACCCTATTTTTCGGTGGAAGCACAGACAGGTATCATCAGAACAG
CCCTACCCAACATGGACAGGGAGGCCAAGGAGGAGTACCACGTGGTGATCCAGGCCAAGGACATGGGTGG
ACATATGGGCGGACTCTCAGGGACAACCAAAGTGACGATCACACTGACCGATGTCAATGACAACCCACCA
AAGTTTCCGCAGAGCGTATACCAGATGTCTGTGTCAGAAGCAGCCGTCCCTGGGGAGGAAGTAGGAAGAG
TGAAAGCTAAAGATCCAGACATTGGAGAAAATGGCTTAGTCACATACAATATTGTTGATGGAGATGGTAT
GGAATCGTTTGAAATCACAACGGACTATGAAACACAGGAGGGGGTGATAAAGCTGAAAAAGCCTGTAGAT
TTTGAAACCAAAAGAGCCTATAGCTTGAAGGTAGAGGCAGCCAACGTGCACATCGACCCGAAGTTTATCA
GCAATGGCCCTTTCAAGGACACTGTGACCGTCAAGATCTCAGTAGAAGATGCTGATGAGCCCCCTATGTT
CTTGGCCCCAAGTTACATCCACGAAGTCCAAGAAAATGCAGCTGCTGGCACCGTGGTTGGGAGAGTGCAT
GCCAAAGACCCTGATGCTGCCAACAGCCCGATAAGGTATTCCATCGATCGTCACACTGACCTCGACAGAT
TTTTCACTATTAATCCAGAGGATGGTTTTATTAAAACTACAAAACCTCTGGATAGAGAGGAAACAGCCTG
GCTCAACATCACTGTCTTTGCAGCAGAAATCCACAATCGGCATCAGGAAGCCAAAGTCCCAGTGGCCATT
AGGGTCCTTGATGTCAACGATAATGCTCCCAAGTTTGCTGCCCCTTATGAAGGTTTCATCTGTGAGAGTG
ATCAGACCAAGCCACTTTCCAACCAGCCAATTGTTACAATTAGTGCAGATGACAAGGATGACACGGCCAA
TGGACCAAGATTTATCTTCAGCCTACCCCCTGAAATCATTCACAATCCAAATTTCACAGTCAGAGACAAC
CGAGATAACACAGCAGGCGTGTACGCCCGGCGTGGAGGGTTCAGTCGGCAGAAGCAGGACTTGTACCTTC
TGCCCATAGTGATCAGCGATGGCGGCATCCCGCCCATGAGTAGCACCAACACCCTCACCATCAAAGTCTG
CGGGTGCGACGTGAACGGGGCACTGCTCTCCTGCAACGCAGAGGCCTACATTCTGAACGCCGGCCTGAGC
ACAGGCGCCCTGATCGCCATCCTCGCCTGCATCGTCATTCTCCTGGTCATTGTAGTATTGTTTGTGACCC
TGAGAAGGCAAAAGAAAGAACCACTCATTGTCTTTGAGGAAGAAGATGTCCGTGAGAACATCATTACTTA
TGATGATGAAGGGGGTGGGGAAGAAGACACAGAAGCCTTTGATATTGCCACCCTCCAGAATCCTGATGGT
ATCAATGGATTTATCCCCCGCAAAGACATCAAACCTGAGTATCAGTACATGCCTAGACCTGGGCTCCGGC
CAGCGCCCAACAGCGTGGATGTCGATGACTTCATCAACACGAGAATACAGGAGGCAGACAATGACCCCAC
GGCTCCTCCTTATGACTCCATTCAAATCTACGGTTATGAAGGCAGGGGCTCAGTGGCCGGGTCCCTGAGC
TCCCTAGAGTCGGCCACCACAGATTCAGACTTGGACTATGATTATCTACAGAACTGGGGACCTCGTTTTA
AGAAACTAGCAGATTTGTATGGTTCCAAAGACACTTTTGATGACGATTCTTAA

Translation (670 aa):
MAQAVDRDTNRPLEPPSEFIVKVQDINDNPPEFLHETYHANVPERSNVGTSVIQVTASDADDPTYGNSAK
LVYSILEGQPYFSVEAQTGIIRTALPNMDREAKEEYHVVIQAKDMGGHMGGLSGTTKVTITLTDVNDNPP
KFPQSVYQMSVSEAAVPGEEVGRVKAKDPDIGENGLVTYNIVDGDGMESFEITTDYETQEGVIKLKKPVD
FETKRAYSLKVEAANVHIDPKFISNGPFKDTVTVKISVEDADEPPMFLAPSYIHEVQENAAAGTVVGRVH
AKDPDAANSPIRYSIDRHTDLDRFFTINPEDGFIKTTKPLDREETAWLNITVFAAEIHNRHQEAKVPVAI
RVLDVNDNAPKFAAPYEGFICESDQTKPLSNQPIVTISADDKDDTANGPRFIFSLPPEIIHNPNFTVRDN
RDNTAGVYARRGGFSRQKQDLYLLPIVISDGGIPPMSSTNTLTIKVCGCDVNGALLSCNAEAYILNAGLS
TGALIAILACIVILLVIVVLFVTLRRQKKEPLIVFEEEDVRENIITYDDEGGGEEDTEAFDIATLQNPDG
INGFIPRKDIKPEYQYMPRPGLRPAPNSVDVDDFINTRIQEADNDPTAPPYDSIQIYGYEGRGSVAGSLS
SLESATTDSDLDYDYLQNWGPRFKKLADLYGSKDTFDDDS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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