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Report for CCDS81959.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
81959.1 |
Public |
Homo sapiens |
16 |
TNRC6A |
24 |
110 |
108 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:27327](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:81959.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:27327](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 16 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 81959.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
MANE |
Status in CCDS |
Seq. Status |
Links |
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![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000315183.11 |
ENSP00000326900.7 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000315183.11](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000326900.7](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000315183](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000326900](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001330520.3 |
NP_001317449.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001330520.3](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001317449.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001330520](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001317449](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001317449.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
RefSeq |
Length |
Related UniProtKB/SwissProt |
Length |
Identity |
Gaps |
Mismatches |
NP_001317449.1 |
1913 |
Q8NDV7-6 |
1913 |
100% |
0 |
0 |
Chromosomal Locations for CCDS 81959.1
Assembly GRCh38.p14 (GCF_000001405.40)
CCDS Sequence Data |
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Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (5742 nt): ATGAGAGAATTGGAAGCTAAAGCTACCAAAGACGTAGAAAGAAATCTTAGCAGGGATTTAGTGCAAGAAG AAGAACAGTTGATGGAAGAAAAGAAAAAGAAAAAAGACGACAAGAAAAAGAAGGAAGCTGCTCAAAAGAA GGCCACTGAACAAAAAATCAAAGTGCCAGAACAGATAAAGCCCAGTGTAAGCCAGCCTCAGCCTGCCAAC TCTAATAACGGCACTTCCACAGCAACCAGCACTAATAATAATGCCAAGCGAGCTACAGCCAACAATCAGC AGCCACAGCAGCAGCAGCAACAGCAGCAGCCGCAGCAGCAGCAGCCACAGCAGCAGCCACAGCCGCAGCC GCAGCAGCAGCAGCCACAGCAGCAGCCACAGGCCTTGCCTCGGTATCCTCGTGAAGTACCTCCACGATTT CGCCACCAGGAACACAAACAGCTTCTAAAGAGGGGTCAGCATTTTCCTGTTATAGCAGCAAACCTTGGAT CTGCTGTTAAGGTGTTAAACAGCCAGTCAGAAAGCAGTGCTTTAACAAATCAACAGCCACAAAATAACGG AGAGGTGCAGAACAGCAAAAACCAGTCAGATATAAACCACAGTACTTCAGGATCCCATTATGAAAATTCC CAGCGGGGACCTGTGTCTTCTACAAGTGATTCTAGCACAAACTGTAAGAATGCTGTTGTAAGTGACTTGT CGGAAAAAGAAGCATGGCCCTCAGCCCCTGGCAGTGATCCGGAGTTGGCTTCAGAATGTATGGATGCTGA TTCTGCCTCCAGTTCTGAATCAGAGAGAAACATCACTATCATGGCTTCAGGGAACACAGGTGGTGAAAAA GATGGCCTTCGGAATAGCACTGGACTTGGTTCCCAAAACAAGTTTGTAGTTGGTAGCAGCAGCAATAATG TGGGCCATGGAAGTAGTACTGGGCCATGGGGTTTTTCCCATGGAGCCATAATAAGCACATGTCAGGTCTC TGTGGATGCTCCTGAAAGCAAATCTGAAAGTAGCAACAATAGAATGAATGCTTGGGGCACTGTAAGTTCT TCATCAAATGGAGGGTTAAATCCAAGCACTTTGAATTCAGCTAGCAACCATGGTGCCTGGCCAGTATTAG AGAACAATGGACTTGCCCTAAAAGGGCCTGTAGGGAGTGGTAGTTCTGGCATTAATATTCAGTGCAGTAC TATAGGCCAGATGCCTAACAATCAGAGTATTAACTCTAAAGTGAGTGGTGGTTCTACCCATGGTACCTGG GGAAGCCTTCAGGAAACTTGTGAATCTGAAGTAAGTGGTACACAGAAGGTTTCATTCAGTGGTCAACCTC AAAATATTACCACTGAAATGACTGGACCAAATAACACTACTAACTTTATGACCTCTAGTTTACCAAACTC CGGTTCAGTGCAGAATAATGAGCTGCCTAGTAGTAACACAGGGGCCTGGCGTGTGAGCACAATGAATCAT CCTCAGATGCAGGCTCCATCAGGTATGAATGGCACTTCCCTTTCTCACCTTAGCAATGGAGAGTCAAAAA GTGGAGGCTCTTATGGTACTACATGGGGTGCCTATGGTTCTAATTACTCTGGAGACAAATGTTCAGGCCC TAATGGCCAAGCTAATGGTGACACTGTGAATGCAACTCTAATGCAGCCTGGCGTAAATGGTCCTATGGGC ACTAACTTTCAAGTTAACACAAACAAAGGAGGTGGTGTGTGGGAATCTGGTGCAGCAAACTCCCAGAGTA CATCATGGGGAAGTGGAAATGGCGCAAATTCTGGAGGAAGTCGAAGAGGATGGGGAACCCCTGCACAAAA CACTGGCACTAATTTACCCAGCGTTGAGTGGAACAAACTGCCTAGCAATCAGCATTCCAATGATAGTGCA AATGGCAATGGTAAGACGTTTACAAATGGATGGAAATCTACTGAGGAAGAGGATCAGGGTTCTGCCACAT CTCAGACAAATGAGCAAAGCAGTGTGTGGGCCAAAACAGGAGGTACAGTGGAGAGCGATGGTAGTACAGA AAGCACTGGACGCCTTGAGGAAAAAGGAACTGGGGAAAGTCAGAGTAGAGACAGAAGAAAAATTGATCAG CACACATTACTCCAAAGCATTGTAAACAGAACTGACTTAGATCCACGTGTCCTGTCCAACTCTGGTTGGG GACAGACTCCTATTAAGCAGAATACTGCCTGGGATACAGAAACATCACCTAGAGGGGAACGAAAGACTGA CAATGGGACAGAGGCCTGGGGAAGCTCTGCAACACAGACTTTTAACTCAGGGGCATGTATAGATAAGACT AGCCCTAATGGTAATGATACCTCATCTGTATCAGGGTGGGGCGATCCCAAACCTGCTCTGAGGTGGGGAG ATTCCAAAGGCTCAAACTGCCAGGGGGGGTGGGAAGATGATTCTGCTGCTACAGGAATGGTCAAGAGCAA TCAGTGGGGGAATTGCAAAGAGGAGAAGGCTGCATGGAATGACTCGCAAAAGAATAAACAGGGATGGGGT GATGGACAAAAATCAAGCCAAGGGTGGTCTGTTTCTGCCAGTGATAACTGGGGAGAAACTTCAAGGAATA ACCATTGGGGTGAGGCCAATAAGAAATCCAGCTCAGGAGGTAGTGACAGTGACAGGTCCGTTTCCGGTTG GAACGAACTTGGTAAAACTAGTTCTTTCACTTGGGGAAACAACATAAATCCAAATAATTCATCAGGATGG GATGAATCTTCTAAACCTACTCCTTCCCAGGGATGGGGAGACCCTCCAAAGTCTAATCAGTCTCTAGGTT GGGGAGATTCGTCAAAGCCAGTCAGCTCTCCAGACTGGAACAAGCAACAAGACATTGTTGGATCTTGGGG AATCCCACCAGCTACAGGCAAACCTCCTGGTACAGGCTGGCTGGGGGGACCTATACCAGCCCCAGCAAAA GAAGAAGAACCCACAGGCTGGGAGGAACCATCCCCAGAATCTATACGTCGCAAAATGGAGATTGATGATG GAACTTCAGCTTGGGGAGATCCAAGCAAATACAACTACAAAAATGTGAACATGTGGAACAAAAACGTCCC AAATGGCAACAGCCGTTCAGACCAGCAAGCACAGGTACATCAGCTGCTAACGCCTGCAAGTGCCATCTCA AACAAAGAGGCAAGCAGTGGCTCTGGCTGGGGTGAGCCCTGGGGGGAGCCTTCTACTCCAGCCACAACTG TGGATAATGGTACTTCAGCATGGGGTAAGCCCATAGACAGTGGTCCCAGCTGGGGGGAACCCATTGCTGC GGCATCCAGCACATCCACGTGGGGCTCCAGCTCTGTTGGTCCACAAGCATTAAGCAAATCTGGGCCAAAA TCTATGCAAGATGGCTGGTGTGGTGATGATATGCCATTGCCTGGAAATCGCCCCACTGGCTGGGAAGAGG AAGAGGATGTGGAGATTGGAATGTGGAATAGTAATTCATCTCAAGAGCTTAACTCATCTTTAAATTGGCC ACCATATACAAAGAAAATGTCATCGAAGGGTCTGAGTGGCAAAAAAAGGAGAAGGGAAAGGGGAATGATG AAAGGTGGAAACAAACAAGAAGAAGCGTGGATAAATCCATTTGTTAAACAGTTTTCAAACATCAGTTTTT CGAGAGACTCACCAGAGGAAAATGTACAAAGCAATAAGATGGACCTTTCTGGAGGAATGTTACAAGACAA ACGAATGGAGATAGATAAACATAGCCTAAATATTGGTGATTACAATCGAACGGTCGGGAAAGGCCCTGGT TCTCGGCCTCAGATTTCCAAAGAGTCTTCCATGGAGCGCAATCCTTATTTTGATAAGAATGGCAATCCCA GTATGTTTGGTGTTGGAAACACAGCAGCACAACCCCGGGGCATGCAGCAGCCTCCAGCACAACCTCTTAG TTCATCTCAGCCTAATCTCCGTGCTCAAGTGCCTCCTCCATTACTCTCCCCTCAGGTTCCAGTTTCATTG CTGAAGTATGCACCAAACAACGGTGGCCTGAATCCACTCTTTGGCCCTCAACAGGTAGCCATGCTGAACC AGCTATCCCAGCTAAACCAGCTTTCTCAGATCTCCCAGTTACAGCGATTGTTAGCGCAGCAGCAAAGGGC GCAGAGTCAGAGAAGCGTGCCTTCTGGGAACCGGCCGCAGCAAGACCAGCAGGGTCGACCTCTTAGTGTG CAGCAGCAAATGATGCAACAATCTCGTCAACTTGATCCAAACCTGTTGGTGAAGCAGCAGACTCCACCAT CTCAGCAGCAGCCACTCCATCAGCCAGCCATGAAGTCTTTCCTTGACAATGTCATGCCCCACACTACACC TGAGCTGCAAAAAGGGCCATCACCAATAAATGCTTTCAGCAACTTCCCTATAGGCTTGAACTCAAACTTG AATGTAAATATGGATATGAACAGTATTAAAGAGCCACAGTCAAGACTAAGGAAGTGGACGACAGTGGACA GCATTTCTGTGAACACATCTTTGGATCAAAACTCCAGCAAACATGGTGCTATTTCAAGTGGTTTCAGGCT GGAAGAGTCTCCATTTGTTCCCTATGACTTTATGAACAGCAGTACTTCACCAGCCAGTCCTCCAGGTTCA ATAGGAGATGGCTGGCCACGTGCCAAATCGCCTAACGGCTCTAGCAGTGTTAATTGGCCACCAGAATTTC GTCCTGGTGAGCCATGGAAAGGTTATCCAAACATTGACCCTGAAACTGACCCTTACGTCACTCCTGGCAG TGTCATAAACAATCTTTCAATTAATACTGTGCGGGAAGTTGACCACCTCAGGGACAGGAACAGTGGGTCA TCCTCATCCTTGAACACCACGCTGCCTTCAACTAGTGCCTGGTCATCCATTCGTGCCTCCAACTACAACG TTCCCCTCAGCAGTACAGCACAAAGCACTTCAGCCAGAAATAGTGATTCCAAATTGACATGGTCTCCTGG TTCAGTTACAAACACCTCTCTGGCTCATGAGCTGTGGAAGGTCCCTTTGCCACCTAAAAACATCACTGCT CCGTCCCGCCCACCTCCGGGACTGACTGGTCAGAAGCCACCCTTGTCTACGTGGGATAATTCTCCCCTTC GTATAGGTGGAGGATGGGGAAATTCTGACGCCAGATATACCCCAGGTTCCAGCTGGGGTGAGAGCAGCTC AGGGAGAATAACAAATTGGCTTGTTCTAAAAAACCTTACACCTCAGATCGATGGCTCAACTCTGCGCACT CTGTGCATGCAGCACGGCCCGCTGATCACATTCCACCTGAACCTCCCTCACGGAAATGCTCTGGTCCGCT ACAGTTCAAAAGAAGAGGTAGTGAAGGCACAAAAGTCTCTGCACATGTGTGTACTGGGGAACACTACTAT TCTTGCTGAGTTTGCCAGTGAAGAGGAGATCAGTCGTTTCTTTGCACAAAGCCAGTCTCTGACCCCTTCT CCCGGCTGGCAGTCTCTCGGGTCCAGCCAGAGCCGGCTGGGCTCCCTCGACTGTTCCCACTCATTCTCCA GCCGGACCGATCTCAATCACTGGAATGGTGCTGGGCTGTCGGGAACTAACTGTGGAGACCTTCACGGCAC TTCACTCTGGGGGACCCCGCATTATTCCACAAGCCTGTGGGGTCCCCCAAGCAGCAGCGACCCCCGAGGA ATTAGCAGCCCATCTCCCATTAACGCTTTTCTTTCTGTTGACCACCTGGGTGGGGGTGGAGAGTCCATGT AA
Translation (1913 aa): MRELEAKATKDVERNLSRDLVQEEEQLMEEKKKKKDDKKKKEAAQKKATEQKIKVPEQIKPSVSQPQPAN SNNGTSTATSTNNNAKRATANNQQPQQQQQQQQPQQQQPQQQPQPQPQQQQPQQQPQALPRYPREVPPRF RHQEHKQLLKRGQHFPVIAANLGSAVKVLNSQSESSALTNQQPQNNGEVQNSKNQSDINHSTSGSHYENS QRGPVSSTSDSSTNCKNAVVSDLSEKEAWPSAPGSDPELASECMDADSASSSESERNITIMASGNTGGEK DGLRNSTGLGSQNKFVVGSSSNNVGHGSSTGPWGFSHGAIISTCQVSVDAPESKSESSNNRMNAWGTVSS SSNGGLNPSTLNSASNHGAWPVLENNGLALKGPVGSGSSGINIQCSTIGQMPNNQSINSKVSGGSTHGTW GSLQETCESEVSGTQKVSFSGQPQNITTEMTGPNNTTNFMTSSLPNSGSVQNNELPSSNTGAWRVSTMNH PQMQAPSGMNGTSLSHLSNGESKSGGSYGTTWGAYGSNYSGDKCSGPNGQANGDTVNATLMQPGVNGPMG TNFQVNTNKGGGVWESGAANSQSTSWGSGNGANSGGSRRGWGTPAQNTGTNLPSVEWNKLPSNQHSNDSA NGNGKTFTNGWKSTEEEDQGSATSQTNEQSSVWAKTGGTVESDGSTESTGRLEEKGTGESQSRDRRKIDQ HTLLQSIVNRTDLDPRVLSNSGWGQTPIKQNTAWDTETSPRGERKTDNGTEAWGSSATQTFNSGACIDKT SPNGNDTSSVSGWGDPKPALRWGDSKGSNCQGGWEDDSAATGMVKSNQWGNCKEEKAAWNDSQKNKQGWG DGQKSSQGWSVSASDNWGETSRNNHWGEANKKSSSGGSDSDRSVSGWNELGKTSSFTWGNNINPNNSSGW DESSKPTPSQGWGDPPKSNQSLGWGDSSKPVSSPDWNKQQDIVGSWGIPPATGKPPGTGWLGGPIPAPAK EEEPTGWEEPSPESIRRKMEIDDGTSAWGDPSKYNYKNVNMWNKNVPNGNSRSDQQAQVHQLLTPASAIS NKEASSGSGWGEPWGEPSTPATTVDNGTSAWGKPIDSGPSWGEPIAAASSTSTWGSSSVGPQALSKSGPK SMQDGWCGDDMPLPGNRPTGWEEEEDVEIGMWNSNSSQELNSSLNWPPYTKKMSSKGLSGKKRRRERGMM KGGNKQEEAWINPFVKQFSNISFSRDSPEENVQSNKMDLSGGMLQDKRMEIDKHSLNIGDYNRTVGKGPG SRPQISKESSMERNPYFDKNGNPSMFGVGNTAAQPRGMQQPPAQPLSSSQPNLRAQVPPPLLSPQVPVSL LKYAPNNGGLNPLFGPQQVAMLNQLSQLNQLSQISQLQRLLAQQQRAQSQRSVPSGNRPQQDQQGRPLSV QQQMMQQSRQLDPNLLVKQQTPPSQQQPLHQPAMKSFLDNVMPHTTPELQKGPSPINAFSNFPIGLNSNL NVNMDMNSIKEPQSRLRKWTTVDSISVNTSLDQNSSKHGAISSGFRLEESPFVPYDFMNSSTSPASPPGS IGDGWPRAKSPNGSSSVNWPPEFRPGEPWKGYPNIDPETDPYVTPGSVINNLSINTVREVDHLRDRNSGS SSSLNTTLPSTSAWSSIRASNYNVPLSSTAQSTSARNSDSKLTWSPGSVTNTSLAHELWKVPLPPKNITA PSRPPPGLTGQKPPLSTWDNSPLRIGGGWGNSDARYTPGSSWGESSSGRITNWLVLKNLTPQIDGSTLRT LCMQHGPLITFHLNLPHGNALVRYSSKEEVVKAQKSLHMCVLGNTTILAEFASEEEISRFFAQSQSLTPS PGWQSLGSSQSRLGSLDCSHSFSSRTDLNHWNGAGLSGTNCGDLHGTSLWGTPHYSTSLWGPPSSSDPRG ISSPSPINAFLSVDHLGGGGESM
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