NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS81943.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
81943.1 Public Homo sapiens 16 SRL 24 110 108 CCDS HistoryNCBI Gene:6345Re-query CCDS DB by CCDS ID:81943.1Re-query CCDS DB by GeneID:6345See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 81943.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000537996.1 ENSP00000440350.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000537996.1Link to Ensembl Protein Viewer:ENSP00000440350.1Re-query CCDS DB by Nucleotide ID:ENST00000537996Re-query CCDS DB by Protein ID:ENSP00000440350
Original member Current member NCBI NM_001323667.1 NP_001310596.1 Accepted alive Link to Nucleotide Sequence:NM_001323667.1Link to Protein Sequence:NP_001310596.1Re-query CCDS DB by Nucleotide ID:NM_001323667Re-query CCDS DB by Protein ID:NP_001310596Link to BLAST:NP_001310596.1
Original member Current member NCBI NM_001323668.1 NP_001310597.1 Accepted alive Link to Nucleotide Sequence:NM_001323668.1Link to Protein Sequence:NP_001310597.1Re-query CCDS DB by Nucleotide ID:NM_001323668Re-query CCDS DB by Protein ID:NP_001310597Link to BLAST:NP_001310597.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001310596.1 431 Q86TD4-3 431 100% 0 0
NP_001310597.1 431 Q86TD4-3 431 100% 0 0

Chromosomal Locations for CCDS 81943.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 4192153 4192964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4195553 4195786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4197799 4197915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4203166 4203261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4204533 4204569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1296 nt):
ATGCTGAATGAGGACAAGCCATCCGATGACTACTCTGCGGTGCTGCAGCGGCTTCGGAAGATCTACCACT
CATCCATCAAGCCTCTGGAGCAGTCCTACAAGTACAATGAGCTCCGGCAGCATGAGATCACAGATGGAGA
GATTACCTCCAAGCCCATGGTACTGTTCCTGGGACCGTGGAGTGTTGGTAAATCTACCATGATAAACTAC
CTCCTTGGGCTGGAAAATACTCGCTATCAGCTCTATACAGGCGCTGAACCCACCACCTCTGAGTTCACGG
TCCTCATGCATGGGCCTAAGCTGAAAACCATCGAGGGCATCGTCATGGCTGCTGACAGCGCCCGTTCCTT
CTCACCCCTTGAGAAGTTTGGCCAGAATTTCCTAGAGAAGCTGATTGGCATTGAGGTTCCCCACAAACTT
CTGGAGAGGGTCACTTTTGTGGATACACCAGGCATCATCGAGAACCGCAAGCAGCAAGAAAGAGGCTACC
CCTTCAACGACGTGTGCCAGTGGTTCATCGACAGAGCTGACCTCATCTTTGTCGTCTTTGACCCAACAAA
GCTGGATGTGGGTCTAGAGCTGGAGATGCTCTTCCGCCAGTTGAAGGGGCGTGAATCCCAGATAAGGATC
ATCCTGAACAAGGCTGACAATCTGGCCACCCAAATGCTCATGCGGGTTTACGGGGCCCTCTTCTGGAGCT
TGGCCCCTCTCATCAATGTCACAGAGCCCCCAAGGGTTTACGTCAGCTCCTTCTGGCCACAAGAGTATAA
GCCGGACACCCATCAGGAACTGTTCCTCCAAGAAGAGATCTCCCTCCTAGAAGACCTGAATCAGGTGATC
GAGAACAGACTGGAGAACAAGATTGCCTTCATCCGCCAGCACGCCATCCGGGTCCGCATCCACGCCCTCC
TGGTTGACCGCTACCTGCAGACTTACAAGGACAAAATGACCTTCTTCAGTGATGGAGAACTGGTCTTTAA
GGACATTGTGGAAGATCCCGATAAATTCTACATCTTCAAGACCATCCTGGCAAAGACCAATGTCAGCAAA
TTTGACCTTCCCAACCGCGAGGCCTATAAGGACTTCTTCGGCATCAATCCCATTTCCAGTTTCAAACTGC
TCTCCCAGCAGTGCTCCTACATGGGAGGTTGCTTTCTGGAGAAGATTGAGCGGGCCATCACTCAGGAGCT
TCCGGGCCTCCTGGGTAGCCTCGGGCTCGGGAAGAATCCAGGTGCTCTCAACTGTGACAAAACAGGGTGT
AGCGAAACACCAAAAAATCGCTACAGGAAGCACTAG

Translation (431 aa):
MLNEDKPSDDYSAVLQRLRKIYHSSIKPLEQSYKYNELRQHEITDGEITSKPMVLFLGPWSVGKSTMINY
LLGLENTRYQLYTGAEPTTSEFTVLMHGPKLKTIEGIVMAADSARSFSPLEKFGQNFLEKLIGIEVPHKL
LERVTFVDTPGIIENRKQQERGYPFNDVCQWFIDRADLIFVVFDPTKLDVGLELEMLFRQLKGRESQIRI
ILNKADNLATQMLMRVYGALFWSLAPLINVTEPPRVYVSSFWPQEYKPDTHQELFLQEEISLLEDLNQVI
ENRLENKIAFIRQHAIRVRIHALLVDRYLQTYKDKMTFFSDGELVFKDIVEDPDKFYIFKTILAKTNVSK
FDLPNREAYKDFFGINPISSFKLLSQQCSYMGGCFLEKIERAITQELPGLLGSLGLGKNPGALNCDKTGC
SETPKNRYRKH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH