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Report for CCDS81730.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
81730.1 Public Homo sapiens 12 PARPBP 24 110 108 CCDS HistoryNCBI Gene:55010Re-query CCDS DB by CCDS ID:81730.1Re-query CCDS DB by GeneID:55010See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 81730.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000392911.6 ENSP00000376643.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000392911.6Link to Ensembl Protein Viewer:ENSP00000376643.2Re-query CCDS DB by Nucleotide ID:ENST00000392911Re-query CCDS DB by Protein ID:ENSP00000376643
Original member Current member NCBI NM_001319993.2 NP_001306922.1 Accepted alive Link to Nucleotide Sequence:NM_001319993.2Link to Protein Sequence:NP_001306922.1Re-query CCDS DB by Nucleotide ID:NM_001319993Re-query CCDS DB by Protein ID:NP_001306922Link to BLAST:NP_001306922.1
Original member Current member NCBI NM_001319994.2 NP_001306923.1 Accepted alive Link to Nucleotide Sequence:NM_001319994.2Link to Protein Sequence:NP_001306923.1Re-query CCDS DB by Nucleotide ID:NM_001319994Re-query CCDS DB by Protein ID:NP_001306923Link to BLAST:NP_001306923.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001306922.1 498 Q9NWS1-2 498 100% 0 0
NP_001306923.1 498 Q9NWS1-2 498 100% 0 0

Chromosomal Locations for CCDS 81730.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 102148320 102148463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 102153869 102153976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 102164438 102164608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 102165729 102165883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 102175483 102175666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 102178592 102178770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 102182549 102182627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 102195312 102195447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 102195951 102196291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1497 nt):
ATGGACGTGACTGACCATTATGAGGACGTTAGGAAGATTTATGATGATTTCTTGAAGAACAGTAATATGT
TAGATCTGATTGATGTTTATCAAAAATGTAGGGCTTTGACTTCTAATTGTGAAAATTATAACACAGTATC
TCCTAGTCAACTACTGGATTTTCTGTCTGGCAAACAGTATGCAGTAGGTGATGAAACTGATCTTTCTATA
CCAACATCACCAACAAGTAAATACAACCGTGATAATGAAAAGGTGCAGCTGCTAGCAAGGAAAATTATCT
TTTCATATTTAAATCTGCTAGTGAATTCAAAGAATGACCTGGCTGTGGCTTATATTCTCAATATTCCTGA
TAGAGGACTAGGAAGAGAAGCCTTCACTGATTTGAAACATGCTGCTCGAGAGAAACAAATGTCTATCTTT
TTGGTGGCCACGTCTTTTATTAGAACAATAGAGCTTGGAGGGAAAGGATATGCACCACCACCATCAGATC
CTTTAAGGACACATGTAAAGGGATTGTCTAATTTTATTAATTTCATTGACAAATTAGATGAGATTCTTGG
AGAAATACCAAACCCAAGCATTGCAGGGGGTCAAATACTGTCAGTGATAAAGATGCAACTGATTAAAGGC
CAAAACAGCAGGGATCCTTTTTGCAAAGCAATAGAGGAAGTTGCTCAGGATTTGGATTTGAGGATTAAAA
ATATTATCAATTCTCAAGAAGGTGTTGTAGCTCTTAGCACCACTGACATCAGTCCTGCTCGGCCAAAATC
TCATGCCATAAACCATGGTACTGCATACTGTGGCAGAGATACTGTGAAAGCCTTATTAGTTCTTTTGGAC
GAAGAAGCAGCTAATGCTCCTACCAAAAACAAAGCAGAGCTTTTATATGATGAGGAAAACACAATCCATC
ATCATGGAACGTCTATTCTTACACTTTTTAGGTCTCCCACACAGGTGAATAATTCGATAAAACCCCTAAG
AGAACGCATCTGTGTGTCAATGCAAGAGAAAAAAATTAAGATGAAGCAAACTTTAATTAGATCCCAATTT
GCTTGTACTTATAAAGATGACTACATGATAAGCAAGGATAATTGGAATAATGTTAATTTAGCATCAAAGC
CTTTGTGTGTTCTTTACATGGAAAATGACCTTTCTGAGGGTGTAAATCCATCTGTTGGAAGATCAACAAT
TGGAACGAGTTTTGGAAATGTTCATCTGGACAGAAGTAAAAATGAAAAAGTATCAAGAAAATCAACCAGT
CAGACAGGAAATAAAAGCTCAAAAAGGAAACAGGTGGATTTGGATGGTGAAAATATTCTCTGTGATAATA
GAAATGAACCACCTCAACATAAAAATGCTAAAATACCTAAGAAATCAAATGATTCACAGAATAGATTGTA
CGGCAAACTAGCTAAAGTAGCAAAAAGTAATAAATGTACTGCCAAGGACAAGTTGATTTCTGGCCAGGCA
AAGTTAACTCAGTTTTTTAGACTATAA

Translation (498 aa):
MDVTDHYEDVRKIYDDFLKNSNMLDLIDVYQKCRALTSNCENYNTVSPSQLLDFLSGKQYAVGDETDLSI
PTSPTSKYNRDNEKVQLLARKIIFSYLNLLVNSKNDLAVAYILNIPDRGLGREAFTDLKHAAREKQMSIF
LVATSFIRTIELGGKGYAPPPSDPLRTHVKGLSNFINFIDKLDEILGEIPNPSIAGGQILSVIKMQLIKG
QNSRDPFCKAIEEVAQDLDLRIKNIINSQEGVVALSTTDISPARPKSHAINHGTAYCGRDTVKALLVLLD
EEAANAPTKNKAELLYDEENTIHHHGTSILTLFRSPTQVNNSIKPLRERICVSMQEKKIKMKQTLIRSQF
ACTYKDDYMISKDNWNNVNLASKPLCVLYMENDLSEGVNPSVGRSTIGTSFGNVHLDRSKNEKVSRKSTS
QTGNKSSKRKQVDLDGENILCDNRNEPPQHKNAKIPKKSNDSQNRLYGKLAKVAKSNKCTAKDKLISGQA
KLTQFFRL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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