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Report for CCDS81728.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
81728.1 Public Homo sapiens 12 PARPBP 24 110 108 CCDS HistoryNCBI Gene:55010Re-query CCDS DB by CCDS ID:81728.1Re-query CCDS DB by GeneID:55010See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 81728.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000541394.5 ENSP00000440850.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000541394.5Link to Ensembl Protein Viewer:ENSP00000440850.1Re-query CCDS DB by Nucleotide ID:ENST00000541394Re-query CCDS DB by Protein ID:ENSP00000440850
Original member Current member NCBI NM_001319988.2 NP_001306917.1 Accepted alive Link to Nucleotide Sequence:NM_001319988.2Link to Protein Sequence:NP_001306917.1Re-query CCDS DB by Nucleotide ID:NM_001319988Re-query CCDS DB by Protein ID:NP_001306917Link to BLAST:NP_001306917.1

Chromosomal Locations for CCDS 81728.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 102123889 102124041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 102148230 102148463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 102151570 102151800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 102153869 102153976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 102164438 102164608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 102165729 102165883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 102175483 102175666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 102178592 102178770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 102182549 102182627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 102195312 102195447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 102195951 102196291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1971 nt):
ATGGCTGTGTTTAATCAGAAGTCTGTCTCGGATATGATTAAAGAGTTTCGAAAAAATTGGCGTGCTCTTT
GTAACTCTGAGAGAACTACTCTATGTGGTGCAGACTCCATGCTCTTGGCATTGCAGCTTTCTATGGCGGA
GAACAACAAACAGCACAGTGGAGAATTTACAGTCTCTCTCAGTGATGTTTTATTGACATGGAAATACTTG
CTCCATGAGAAATTGAACTTACCAGTTGAAAACATGGACGTGACTGACCATTATGAGGACGTTAGGAAGA
TTTATGATGATTTCTTGAAGAACAGTAATATGTTAGATCTGATTGATGTTTATCAAAAATGTAGGGCTTT
GACTTCTAATTGTGAAAATTATAACACAGTATCTCCTGGGTCAACTATACAGCCACCTTCAGAAAGAGGA
AGCTTGCTGCTGTCTAGGCCAGATCTCTTGGCTCCTGGGGAAGATCCACCAGTGTCAGCCTCATTGACTC
TGGAGCGGCAGAAGGGAGAGTCCCTCTTAGCATGGAGCTGGTCCCTAAACTTCAGATTGCCTGGGATTCC
CATCACGGTCCAGAAGAAGAGACGAGACCTGAAGAAGCTGGCAGCTGTCATGCGGCAAAGTCAACTACTG
GATTTTCTGTCTGGCAAACAGTATGCAGTAGGTGATGAAACTGATCTTTCTATACCAACATCACCAACAA
GTAAATACAACCGTGATAATGAAAAGGTGCAGCTGCTAGCAAGGAAAATTATCTTTTCATATTTAAATCT
GCTAGTGAATTCAAAGAATGACCTGGCTGTGGCTTATATTCTCAATATTCCTGATAGAGGACTAGGAAGA
GAAGCCTTCACTGATTTGAAACATGCTGCTCGAGAGAAACAAATGTCTATCTTTTTGGTGGCCACGTCTT
TTATTAGAACAATAGAGCTTGGAGGGAAAGGATATGCACCACCACCATCAGATCCTTTAAGGACACATGT
AAAGGGATTGTCTAATTTTATTAATTTCATTGACAAATTAGATGAGATTCTTGGAGAAATACCAAACCCA
AGCATTGCAGGGGGTCAAATACTGTCAGTGATAAAGATGCAACTGATTAAAGGCCAAAACAGCAGGGATC
CTTTTTGCAAAGCAATAGAGGAAGTTGCTCAGGATTTGGATTTGAGGATTAAAAATATTATCAATTCTCA
AGAAGGTGTTGTAGCTCTTAGCACCACTGACATCAGTCCTGCTCGGCCAAAATCTCATGCCATAAACCAT
GGTACTGCATACTGTGGCAGAGATACTGTGAAAGCCTTATTAGTTCTTTTGGACGAAGAAGCAGCTAATG
CTCCTACCAAAAACAAAGCAGAGCTTTTATATGATGAGGAAAACACAATCCATCATCATGGAACGTCTAT
TCTTACACTTTTTAGGTCTCCCACACAGGTGAATAATTCGATAAAACCCCTAAGAGAACGCATCTGTGTG
TCAATGCAAGAGAAAAAAATTAAGATGAAGCAAACTTTAATTAGATCCCAATTTGCTTGTACTTATAAAG
ATGACTACATGATAAGCAAGGATAATTGGAATAATGTTAATTTAGCATCAAAGCCTTTGTGTGTTCTTTA
CATGGAAAATGACCTTTCTGAGGGTGTAAATCCATCTGTTGGAAGATCAACAATTGGAACGAGTTTTGGA
AATGTTCATCTGGACAGAAGTAAAAATGAAAAAGTATCAAGAAAATCAACCAGTCAGACAGGAAATAAAA
GCTCAAAAAGGAAACAGGTGGATTTGGATGGTGAAAATATTCTCTGTGATAATAGAAATGAACCACCTCA
ACATAAAAATGCTAAAATACCTAAGAAATCAAATGATTCACAGAATAGATTGTACGGCAAACTAGCTAAA
GTAGCAAAAAGTAATAAATGTACTGCCAAGGACAAGTTGATTTCTGGCCAGGCAAAGTTAACTCAGTTTT
TTAGACTATAA

Translation (656 aa):
MAVFNQKSVSDMIKEFRKNWRALCNSERTTLCGADSMLLALQLSMAENNKQHSGEFTVSLSDVLLTWKYL
LHEKLNLPVENMDVTDHYEDVRKIYDDFLKNSNMLDLIDVYQKCRALTSNCENYNTVSPGSTIQPPSERG
SLLLSRPDLLAPGEDPPVSASLTLERQKGESLLAWSWSLNFRLPGIPITVQKKRRDLKKLAAVMRQSQLL
DFLSGKQYAVGDETDLSIPTSPTSKYNRDNEKVQLLARKIIFSYLNLLVNSKNDLAVAYILNIPDRGLGR
EAFTDLKHAAREKQMSIFLVATSFIRTIELGGKGYAPPPSDPLRTHVKGLSNFINFIDKLDEILGEIPNP
SIAGGQILSVIKMQLIKGQNSRDPFCKAIEEVAQDLDLRIKNIINSQEGVVALSTTDISPARPKSHAINH
GTAYCGRDTVKALLVLLDEEAANAPTKNKAELLYDEENTIHHHGTSILTLFRSPTQVNNSIKPLRERICV
SMQEKKIKMKQTLIRSQFACTYKDDYMISKDNWNNVNLASKPLCVLYMENDLSEGVNPSVGRSTIGTSFG
NVHLDRSKNEKVSRKSTSQTGNKSSKRKQVDLDGENILCDNRNEPPQHKNAKIPKKSNDSQNRLYGKLAK
VAKSNKCTAKDKLISGQAKLTQFFRL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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