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Report for CCDS81530.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
81530.1 Public Homo sapiens 11 GATD1 24 110 108 CCDS HistoryNCBI Gene:347862Re-query CCDS DB by CCDS ID:81530.1Re-query CCDS DB by GeneID:347862See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 81530.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000354286.8 ENSP00000346239.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000354286.8Link to Ensembl Protein Viewer:ENSP00000346239.4Re-query CCDS DB by Nucleotide ID:ENST00000354286Re-query CCDS DB by Protein ID:ENSP00000346239
Original member Current member EBI ENST00000524550.5 ENSP00000431183.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000524550.5Link to Ensembl Protein Viewer:ENSP00000431183.1Re-query CCDS DB by Nucleotide ID:ENST00000524550Re-query CCDS DB by Protein ID:ENSP00000431183
Original member Current member NCBI NM_001318824.2 NP_001305753.1 Accepted alive Link to Nucleotide Sequence:NM_001318824.2Link to Protein Sequence:NP_001305753.1Re-query CCDS DB by Nucleotide ID:NM_001318824Re-query CCDS DB by Protein ID:NP_001305753Link to BLAST:NP_001305753.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001305753.1 184 Q8NB37-3 184 100% 0 0

Chromosomal Locations for CCDS 81530.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 770897 770903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 770993 771104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 771333 771426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 772427 772521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 774008 774113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 775066 775142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 777399 777462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (555 nt):
ATGGCGTCCGAGCGGCTCCCTAACAGGCCCGCCTGTCTGCTCGTGGCCAGCGGCGCCGCCGAAGGTGTGT
CGGCCCAGTCCTTCCTCCACTGTTTCACGATGGCCAGCACCGCCTTCAACCTGCAGGTGGCCACCCCTGG
GGGGAAAGCCATGGAATTTGTGGATGTGACTGAGAGCAATGCACGCTGGGTGCAAGACTTCCGCCTCAAG
GCTTACGCCAGCCCCGCCAAGCTCGAGTCCATCGATGAACCCATCTGCGCCGTCGGCCACGGTGTCGCCG
CCCTGTGCTGTGCCACCAACGAGGACAGATCCTGGGTGTTCGACAGCTACAGCCTGACAGGGCCCTCTGT
GTGTGAGCTCGTCAGGGCCCCCGGCTTCGCCCGCCTGCCGCTCGTGGTGGAGGACTTCGTGAAGGATTCG
GGCGCCTGCTTCAGTGCAAGCGAGCCTGACGCTGTCCACGTCGTGCTGGACCGCCACCTGGTCACAGGCC
AGAATGCCAGCTCCACTGTCCCGGCCGTGCAGAACCTGCTCTTCCTCTGTGGCAGCCGGAAATGA

Translation (184 aa):
MASERLPNRPACLLVASGAAEGVSAQSFLHCFTMASTAFNLQVATPGGKAMEFVDVTESNARWVQDFRLK
AYASPAKLESIDEPICAVGHGVAALCCATNEDRSWVFDSYSLTGPSVCELVRAPGFARLPLVVEDFVKDS
GACFSASEPDAVHVVLDRHLVTGQNASSTVPAVQNLLFLCGSRK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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