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Report for CCDS81431.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
81431.1 Public Homo sapiens 1 CAPN9 24 110 108 CCDS HistoryNCBI Gene:10753Re-query CCDS DB by CCDS ID:81431.1Re-query CCDS DB by GeneID:10753See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 81431.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000366666.6 ENSP00000355626.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000366666.6Link to Ensembl Protein Viewer:ENSP00000355626.2Re-query CCDS DB by Nucleotide ID:ENST00000366666Re-query CCDS DB by Protein ID:ENSP00000355626
Original member Current member NCBI NM_001319676.2 NP_001306605.1 Accepted alive Link to Nucleotide Sequence:NM_001319676.2Link to Protein Sequence:NP_001306605.1Re-query CCDS DB by Nucleotide ID:NM_001319676Re-query CCDS DB by Protein ID:NP_001306605Link to BLAST:NP_001306605.1

Chromosomal Locations for CCDS 81431.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 230747497 230747709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 230762653 230762786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 230767541 230767709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 230769180 230769263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 230772014 230772099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 230774554 230774631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 230778973 230779133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 230780179 230780336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 230780500 230780708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 230785981 230786017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 230787522 230787602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 230790132 230790189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 230791864 230791928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 230792426 230792494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 230792850 230792928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 230795163 230795279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 230798162 230798220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 230801570 230801596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1884 nt):
ATGCCTTACCTCTACCGGGCCCCAGGGCCTCAGGCACACCCGGTTCCCAAGGACGCCCGGATCACCCACT
CCTCAGGCCAGAGCTTTGAGCAAATGAGGCAGGAGTGCCTGCAGAGAGGCACCCTGTTTGAGGATGCAGA
CTTCCCAGCCAGCAATTCCTCCCTGTTCTACAGTGAGAGGCCGCAGATCCCCTTTGTGTGGAAACGACCA
GGGTTCTGGCAGCACAGTGAGTGGCTGGACGTGGTGATCGATGACCGCCTGCCCACCTTCAGGGACCGCT
TGGTTTTCCTCCACTCTGCCGACCACAACGAGTTCTGGAGCGCCTTGCTGGAAAAAGCCTACGCCAAGCT
AAATGGGAGCTATGAAGCTCTGAAGGGAGGCAGCGCCATCGAGGCCATGGAAGACTTCACTGGGGGTGTG
GCAGAGACCTTCCAAACTAAAGAGGCCCCCGAGAACTTCTATGAGATTCTAGAGAAGGCTTTGAAGAGAG
GCTCCCTGCTGGGCTGCTTCATTGATACCAGAAGTGCTGCAGAATCTGAGGCCCGGACGCCGTTTGGTCT
TATTAAGGGTCATGCCTACAGTGTAACGGGAATTGACCAGGTAAGCTTCCGAGGCCAGAGAATCGAGCTC
ATCCGAATCCGGAACCCTTGGGGCCAGGTTGAGTGGAACGGGTCGTGGAGCGACAGTTCTCCGGAGTGGC
GTTCTGTTGGTCCAGCTGAGCAGAAGCGTCTGTGTCACACTGCTCTGGATGATGGGGAATTCTGGATGGC
ATTTAAGGACTTCAAGGCCCACTTTGATAAAGTGGAGATCTGCAACCTCACTCCCGATGCCCTGGAGGAA
GACGCGATCCACAAATGGGAGGTGACGGTCCATCAGGGAAGCTGGGTTCGCGGCTCCACGGCTGGGGGCT
GCCGCAATTTCCTGGATACCTTTTGGACCAATCCACAAATAAAATTGTCTCTGACTGAGAAAGATGAGGG
GCAGGAGGAGTGTAGTTTCCTTGTAGCCCTGATGCAGAAAGATAGAAGGAAACTCAAGAGATTTGGTGCC
AATGTGCTGACAATCGGCTATGCCATTTATGAGTGCCCTGACAAAGACGAACACCTGAACAAAGACTTCT
TCAGATACCACGCTTCTCGGGCCAGAAGCAAGACGTTCATCAACCTGAGAGAAGTCTCCGACCGGTTCAA
GCTGCCCCCTGGGGAGTACATCCTGATTCCCAGCACTTTTGAGCCCCACCAGGAAGCTGATTTCTGTCTG
AGAATCTTTTCAGAGAAAAAAGCCATTACCCGGGATATGGATGGAAATGTAGACATTGACCTTCCTGAGC
CTCCAAAGCCAACTCCACCTGACCAGGAGACAGAGGAGGAGCAGCGGTTTCGGGCTCTGTTTGAACAAGT
CGCTGGTGAGGACATGGAGGTGACAGCAGAGGAACTTGAGTATGTTTTAAATGCTGTGCTGCAAAAGAAA
AAGGACATCAAATTCAAGAAGCTAAGCCTGATCTCCTGTAAAAACATCATTTCCCTGATGGACACCAGCG
GCAATGGGAAGCTGGAGTTTGATGAATTCAAAGTGTTCTGGGACAAGCTGAAGCAGTGGATTAACCTTTT
CCTTCGGTTTGATGCTGACAAGTCCGGCACCATGTCTACCTATGAACTACGGACTGCACTGAAAGCTGCA
GGCTTTCAGCTGAGCAGCCACCTCCTGCAGCTGATTGTGCTCAGGTATGCGGATGAGGAGCTCCAGCTGG
ACTTCGATGACTTCCTCAACTGCCTGGTCCGGCTGGAGAATGCGAGCCGGGTGTTCCAGGCTCTCAGTAC
AAAGAACAAGGAGTTCATTCATCTCAATATAAATGAGTTCATCCATTTGACAATGAACATCTGA

Translation (627 aa):
MPYLYRAPGPQAHPVPKDARITHSSGQSFEQMRQECLQRGTLFEDADFPASNSSLFYSERPQIPFVWKRP
GFWQHSEWLDVVIDDRLPTFRDRLVFLHSADHNEFWSALLEKAYAKLNGSYEALKGGSAIEAMEDFTGGV
AETFQTKEAPENFYEILEKALKRGSLLGCFIDTRSAAESEARTPFGLIKGHAYSVTGIDQVSFRGQRIEL
IRIRNPWGQVEWNGSWSDSSPEWRSVGPAEQKRLCHTALDDGEFWMAFKDFKAHFDKVEICNLTPDALEE
DAIHKWEVTVHQGSWVRGSTAGGCRNFLDTFWTNPQIKLSLTEKDEGQEECSFLVALMQKDRRKLKRFGA
NVLTIGYAIYECPDKDEHLNKDFFRYHASRARSKTFINLREVSDRFKLPPGEYILIPSTFEPHQEADFCL
RIFSEKKAITRDMDGNVDIDLPEPPKPTPPDQETEEEQRFRALFEQVAGEDMEVTAEELEYVLNAVLQKK
KDIKFKKLSLISCKNIISLMDTSGNGKLEFDEFKVFWDKLKQWINLFLRFDADKSGTMSTYELRTALKAA
GFQLSSHLLQLIVLRYADEELQLDFDDFLNCLVRLENASRVFQALSTKNKEFIHLNINEFIHLTMNI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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