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Report for CCDS81396.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
81396.1 Public Homo sapiens 1 RCSD1 24 110 108 CCDS HistoryNCBI Gene:92241Re-query CCDS DB by CCDS ID:81396.1Re-query CCDS DB by GeneID:92241See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 81396.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000537350.5 ENSP00000439409.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000537350.5Link to Ensembl Protein Viewer:ENSP00000439409.1Re-query CCDS DB by Nucleotide ID:ENST00000537350Re-query CCDS DB by Protein ID:ENSP00000439409
Original member Current member NCBI NM_001322923.2 NP_001309852.1 Accepted alive Link to Nucleotide Sequence:NM_001322923.2Link to Protein Sequence:NP_001309852.1Re-query CCDS DB by Nucleotide ID:NM_001322923Re-query CCDS DB by Protein ID:NP_001309852Link to BLAST:NP_001309852.1

Chromosomal Locations for CCDS 81396.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 167630424 167630429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 167683900 167684001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 167690049 167690120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 167694099 167694302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 167697099 167697842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 167704664 167704696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1161 nt):
ATGGAGGAAAGACCGGCAGAGACCAATGCCAATGTGGACAACTCGGCGTCCCCCTCGGTGGCCCAGCTGG
CCGGGCGGTTTAGGGAGCAGGCGGCTGCAGCCAAGGAGAAATCACCACCCAATGCGAGCCACCCTCCTAA
ATTCAAGGTCAAGAGCTCGCCTCTGATTGAGAAGCTTCAGGCCAATTTAACCTTTGACCCAGCTGCTCTA
CTGCCTGGGGCCTCACCCAAGAGTCCTGGACTCAAGGCTATGGTGTCGCCATTTCACAGCCCACCTTCTA
CCCCCAGCAGCCCTGGTGTGCGATCTAGGCCCAGCGAGGCAGAGGAGGTGCCTGTCAGCTTCGACCAGCC
CCCTGAAGGCAGTCATCTGCCCTGTTACAACAAGGTGCGGACGAGGGGCTCAATAAAAAGGCGCCCTCCC
TCCAGGCGATTCCGAAGGTCACAGTCAGACTGTGGAGAACTTGGAGATTTCAGGGCGGTGGAGTCATCTC
AGCAGAACGGTGCTAAGGAAGAGGATGGGGATGAAGTGTTGCCATCCAAGAGCAAGGCCCCAGGATCCCC
TTTGTCCAGTGAGGGAGCAGCGGGAGAGGGAGTGAGAACCCTGGGACCTGCTGAAAAGCCTCCTCTGAGG
AGGTCACCCAGCAGGACAGAGAAGCAGGAGGAGGACAGGGCCACAGAGGAAGCCAAGAACGGTGAAAAGG
CCAGGCGGAGTTCAGAGGAGGTGGACGGCCAGCACCCGGCCCAAGAGGAGGTCCCGGAATCGCCCCAGAC
CTCTGGCCCAGAGGCAGAAAATAGGTGTGGGAGCCCCAGGGAGGAAAAGCCAGCTGGAGAGGAAGCAGAG
ATGGAAAAGGCTACAGAGGTGAAGGGGGAGAGGGTGCAAAATGAAGAGGTGGGACCTGAACATGACAGCC
AAGAAACAAAGAAGCTGGAGGAGGGAGCTGCAGTGAAGGAGACCCCCCACAGTCCCCCTGGAGGAGTGAA
GGGCGGAGATGTCCCCAAGCAGGAAAAAGGCAAGGAAAAACAACAGGAGGGGGCAGTGCTCGAGCCAGGC
TGCAGCCCCCAGACCGGCCCTGCCCAGCTGGAGACCAGCAGTGAGGTCCAGAGCGAGCCAGCAGTCCCCA
AGCCGGAGGATGACACTCCTGTCCAGGACACTAAAATGTGA

Translation (386 aa):
MEERPAETNANVDNSASPSVAQLAGRFREQAAAAKEKSPPNASHPPKFKVKSSPLIEKLQANLTFDPAAL
LPGASPKSPGLKAMVSPFHSPPSTPSSPGVRSRPSEAEEVPVSFDQPPEGSHLPCYNKVRTRGSIKRRPP
SRRFRRSQSDCGELGDFRAVESSQQNGAKEEDGDEVLPSKSKAPGSPLSSEGAAGEGVRTLGPAEKPPLR
RSPSRTEKQEEDRATEEAKNGEKARRSSEEVDGQHPAQEEVPESPQTSGPEAENRCGSPREEKPAGEEAE
MEKATEVKGERVQNEEVGPEHDSQETKKLEEGAAVKETPHSPPGGVKGGDVPKQEKGKEKQQEGAVLEPG
CSPQTGPAQLETSSEVQSEPAVPKPEDDTPVQDTKM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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