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Report for CCDS81377.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
81377.1 Public Homo sapiens 1 SNX27 24 110 108 CCDS HistoryNCBI Gene:81609Re-query CCDS DB by CCDS ID:81377.1Re-query CCDS DB by GeneID:81609See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 81377.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000458013.7 ENSP00000400333.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000458013.7Link to Ensembl Protein Viewer:ENSP00000400333.2Re-query CCDS DB by Nucleotide ID:ENST00000458013Re-query CCDS DB by Protein ID:ENSP00000400333
Original member Current member NCBI NM_001330723.2 NP_001317652.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001330723.2Link to Protein Sequence:NP_001317652.1Re-query CCDS DB by Nucleotide ID:NM_001330723Re-query CCDS DB by Protein ID:NP_001317652Link to BLAST:NP_001317652.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001317652.1 541 Q96L92-1 541 100% 0 0

Chromosomal Locations for CCDS 81377.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 151612202 151612512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151638888 151639119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151658235 151658427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151660798 151660862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151662166 151662270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151665933 151666011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151668472 151668635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151683356 151683445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151692435 151692584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151692911 151693039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151693424 151693483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151694370 151694417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1626 nt):
ATGGCGGACGAGGACGGGGAAGGGATTCATCCCTCAGCCCCTCACAGGAACGGAGGTGGCGGCGGCGGCG
GGGGGTCTGGGCTCCACTGCGCCGGGAACGGCGGCGGGGGAGGCGGCGGCCCGCGGGTCGTGCGCATCGT
CAAGTCCGAGTCCGGCTACGGCTTCAACGTGCGGGGCCAAGTGAGCGAGGGCGGGCAACTGCGGAGCATC
AACGGGGAGCTGTACGCGCCGCTGCAGCATGTGAGCGCCGTGCTGCCCGGGGGGGCGGCCGATCGGGCCG
GGGTGCGCAAGGGGGACCGCATCCTGGAGGTGAACCACGTGAATGTTGAGGGGGCGACACACAAGCAGGT
GGTGGACCTGATTCGAGCAGGCGAGAAGGAATTGATCTTGACAGTGTTATCTGTACCTCCTCATGAGGCA
GATAACCTAGATCCCAGTGACGACTCGTTGGGACAATCATTTTATGATTACACAGAAAAGCAAGCAGTGC
CCATATCGGTCCCCAGATACAAACATGTGGAGCAGAATGGTGAGAAGTTTGTGGTATATAATGTTTACAT
GGCAGGGAGGCAGCTGTGTTCTAAGCGGTACCGGGAGTTTGCTATCCTACACCAGAACCTGAAGAGAGAG
TTTGCCAACTTTACATTTCCTCGACTCCCAGGGAAGTGGCCATTTTCATTATCAGAACAACAATTAGATG
CCCGACGTCGGGGATTGGAAGAATATCTAGAAAAAGTGTGTTCAATACGAGTAATTGGTGAGAGTGACAT
CATGCAGGAATTCCTATCAGAATCCGATGAGAACTACAATGGTGTGTCCGACGTAGAGCTGAGAGTAGCA
TTACCAGATGGAACAACGGTTACAGTCAGGGTTAAAAAGAACAGTACTACAGACCAAGTATATCAGGCTA
TCGCAGCAAAGGTTGGCATGGACAGTACGACAGTGAATTACTTTGCCTTATTTGAAGTGATCAGTCACTC
CTTTGTACGTAAATTGGCACCTAATGAGTTTCCTCACAAACTCTACATTCAGAATTATACATCAGCTGTG
CCAGGCACCTGCTTGACCATTCGAAAGTGGCTTTTTACAACAGAAGAAGAAATTCTCTTAAATGACAATG
ACCTTGCTGTTACCTACTTCTTTCATCAGGCAGTCGATGATGTGAAGAAAGGTTACATCAAAGCAGAAGA
AAAGTCCTATCAATTACAGAAGCTATACGAACAAAGAAAAATGGTCATGTACCTCAACATGCTAAGGACT
TGTGAGGGCTACAATGAAATCATCTTTCCCCACTGTGCCTGTGACTCCAGGAGGAAGGGGCACGTTATCA
CAGCCATCAGCATCACGCACTTTAAACTGCATGCCTGCACTGAAGAAGGACAGCTGGAGAACCAGGTAAT
TGCATTTGAATGGGATGAGATGCAGCGATGGGACACAGATGAAGAAGGGATGGCCTTCTGTTTCGAATAT
GCACGAGGAGAGAAGAAGCCCCGATGGGTTAAAATCTTCACGCCATATTTCAATTACATGCATGAGTGCT
TCGAGAGGGTGTTCTGCGAGCTCAAGTGGAGAAAAGAGAACATTTTCCAGATGGCGAGGTCACAGCAGAG
AGATGTGGCCACCTAG

Translation (541 aa):
MADEDGEGIHPSAPHRNGGGGGGGGSGLHCAGNGGGGGGGPRVVRIVKSESGYGFNVRGQVSEGGQLRSI
NGELYAPLQHVSAVLPGGAADRAGVRKGDRILEVNHVNVEGATHKQVVDLIRAGEKELILTVLSVPPHEA
DNLDPSDDSLGQSFYDYTEKQAVPISVPRYKHVEQNGEKFVVYNVYMAGRQLCSKRYREFAILHQNLKRE
FANFTFPRLPGKWPFSLSEQQLDARRRGLEEYLEKVCSIRVIGESDIMQEFLSESDENYNGVSDVELRVA
LPDGTTVTVRVKKNSTTDQVYQAIAAKVGMDSTTVNYFALFEVISHSFVRKLAPNEFPHKLYIQNYTSAV
PGTCLTIRKWLFTTEEEILLNDNDLAVTYFFHQAVDDVKKGYIKAEEKSYQLQKLYEQRKMVMYLNMLRT
CEGYNEIIFPHCACDSRRKGHVITAISITHFKLHACTEEGQLENQVIAFEWDEMQRWDTDEEGMAFCFEY
ARGEKKPRWVKIFTPYFNYMHECFERVFCELKWRKENIFQMARSQQRDVAT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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