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Report for CCDS81359.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
81359.1 Public Homo sapiens 1 PHTF1 24 110 108 CCDS HistoryNCBI Gene:10745Re-query CCDS DB by CCDS ID:81359.1Re-query CCDS DB by GeneID:10745See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 81359.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000357783.6 ENSP00000350428.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000357783.6Link to Ensembl Protein Viewer:ENSP00000350428.2Re-query CCDS DB by Nucleotide ID:ENST00000357783Re-query CCDS DB by Protein ID:ENSP00000350428
Original member Current member NCBI NM_001323047.2 NP_001309976.1 Accepted alive Link to Nucleotide Sequence:NM_001323047.2Link to Protein Sequence:NP_001309976.1Re-query CCDS DB by Nucleotide ID:NM_001323047Re-query CCDS DB by Protein ID:NP_001309976Link to BLAST:NP_001309976.1
Original member Current member NCBI NM_001323048.2 NP_001309977.1 Accepted alive Link to Nucleotide Sequence:NM_001323048.2Link to Protein Sequence:NP_001309977.1Re-query CCDS DB by Nucleotide ID:NM_001323048Re-query CCDS DB by Protein ID:NP_001309977Link to BLAST:NP_001309977.1
Original member Current member NCBI NM_001323049.2 NP_001309978.1 Accepted alive Link to Nucleotide Sequence:NM_001323049.2Link to Protein Sequence:NP_001309978.1Re-query CCDS DB by Nucleotide ID:NM_001323049Re-query CCDS DB by Protein ID:NP_001309978Link to BLAST:NP_001309978.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001309976.1 637 Q9UMS5-2 637 100% 0 0
NP_001309977.1 637 Q9UMS5-2 637 100% 0 0
NP_001309978.1 637 Q9UMS5-2 637 100% 0 0

Chromosomal Locations for CCDS 81359.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 113704057 113704167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 113704666 113704797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 113705890 113706162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 113706594 113706722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 113710254 113710475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 113711746 113711835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 113711940 113712113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 113713279 113713438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 113724759 113724893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 113726418 113726574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 113738110 113738268 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 113738730 113738799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 113757699 113757755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 113758659 113758703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1914 nt):
ATGGCCTCAAATGAGAGAGATGCTATATCGTGGTACCAAAAGAAGATTGGAGCCTACGATCAGCAGATAT
GGGAAAAGTCAATCGAACAGACTCAGATTAAGGGTTTGAAAAACAAACCGAAAAAGATGGGCCACATAAA
GCCAGACTTGATTGACGTTGACTTAATCAGAGGGTCAACATTTGCCAAAGCAAAACCTGAAATTCCATGG
ACATCTCTGACTCGGAAGGGGCTTGTTCGAGTTGTATTTTTTCCATTGTTCAGCAATTGGTGGATTCAGG
TTACCTCTTTAAGAATCTTTGTTTGGCTGTTACTACTTTATTTCATGCAAGTTATAGCAATTGTCTTATA
TTTGATGATGCCTATTGTGAACATAAGTGAAGTACTTGGACCCTTGTGCCTTATGCTACTCATGGGAACT
GTCCACTGTCAAATTGTGTCTACTCAGATAACAAGACCATCAGGAAACAATGGAAATCGAAGAAGAAGAA
AATTACGAAAAACTGTAAATGGTGATGGGAGCCGAGAAAATGGAAATAACTCCTCTGATAAAGTCAGAGG
AATAGAAACTTTGGAATCTGTACCCATTATTGGTGGTTTTTGGGAGACTATCTTTGGCAACAGGATTAAA
AGAGTAAAATTAATATCTAACAAAGGGACTGAAACTGACAATGACCCAAGTTGTGTCCATCCTATCATTA
AGAGGAGACAATGTCGACCAGAGATTAGAATGTGGCAAACAAGAGAGAAAGCAAAATTTTCAGATGGAGA
AAAGTGCCGTAGGGAGGCTTTTAGGCGTTTGGGTAATGGGGTGTCTGATGACCTGTCAAGTGAAGAAGAT
GGTGAAGCACGGACACAGATGATATTATTGCGTAGGAGTGTGGAAGGGGCCTCAAGTGACAATGGTTGTG
AAGTTAAGAATAGAAAATCAATACTTTCAAGGCACCTAAACTCTCAGGTAAAGAAAACCACTACAAGGTG
GTGTCATATTGTGCGGGATTCAGATAGTCTGGCTGAATCAGAATTTGAATCAGCAGCCTTCAGCCAGGGC
TCTAGATCGGGTGTGAGTGGTGGCTCTCGAAGCCTCAACATGTCAAGAAGAGACTCAGAAAGCACCCGCC
ATGACTCGGAGACTGAGGACATGTTATGGGACGACCTGCTACATGGCCCAGAGTGCCGGTCATCTGTCAC
CAGTGACAGTGAGGGGGCCCATGTGAATACCCTTCACTCAGGGACCAAACGTGACCCCAAAGAGGATGTT
TTTCAGCAGAATCATTTATTCTGGCTTCAGAATTCAAGTCCTTCCTCTGATCGAGTTAGTGCAATAATCT
GGGAGGGGAATGAGTGCAAAAAGATGGATATGTCTGTGTTGGAAATAAGTGGCATCATCATGAGCAGGGT
CAATGCCTATCAGCAAGGAGTAGGTTATCAGATGCTGGGAAATGTTGTCACTATTGGATTAGCATTTTTT
CCATTCTTACATCGACTTTTCCGTGAGAAGAGCCTTGACCAACTAAAGTCCATTTCAGCTGAGGAGATCT
TGACTCTCTTTTGTGGGGCACCACCTGTTACACCTATTATTGTTTTGTCGATAATTAATTTTTTTGAAAG
ATTGTGTCTTACTTGGATGTTTTTTTTCATGATGTGTGTGGCAGAGAGAACATATAAACAGAGATTTTTA
TTTGCAAAACTCTTCAGCCATATTACTTCTGCCAGGAAAGCTAGGAAATATGAAATACCTCATTTCAGAC
TTAAGAAGGTGGAGAATATTAAAATATGGTTATCACTGCGTTCCTATCTAAAGAGACGGGGGCCACAGCG
TTCAGTTGATGTGGTTGTATCCTCGGTTTTCCTACTGACACTTTCGATTGCTTTCATTTGTTGTGCTCAG
GTAAAAGTTTCACATCTGCTTTAA

Translation (637 aa):
MASNERDAISWYQKKIGAYDQQIWEKSIEQTQIKGLKNKPKKMGHIKPDLIDVDLIRGSTFAKAKPEIPW
TSLTRKGLVRVVFFPLFSNWWIQVTSLRIFVWLLLLYFMQVIAIVLYLMMPIVNISEVLGPLCLMLLMGT
VHCQIVSTQITRPSGNNGNRRRRKLRKTVNGDGSRENGNNSSDKVRGIETLESVPIIGGFWETIFGNRIK
RVKLISNKGTETDNDPSCVHPIIKRRQCRPEIRMWQTREKAKFSDGEKCRREAFRRLGNGVSDDLSSEED
GEARTQMILLRRSVEGASSDNGCEVKNRKSILSRHLNSQVKKTTTRWCHIVRDSDSLAESEFESAAFSQG
SRSGVSGGSRSLNMSRRDSESTRHDSETEDMLWDDLLHGPECRSSVTSDSEGAHVNTLHSGTKRDPKEDV
FQQNHLFWLQNSSPSSDRVSAIIWEGNECKKMDMSVLEISGIIMSRVNAYQQGVGYQMLGNVVTIGLAFF
PFLHRLFREKSLDQLKSISAEEILTLFCGAPPVTPIIVLSIINFFERLCLTWMFFFMMCVAERTYKQRFL
FAKLFSHITSARKARKYEIPHFRLKKVENIKIWLSLRSYLKRRGPQRSVDVVVSSVFLLTLSIAFICCAQ
VKVSHLL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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